RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 FUCA2Q9BTY2 467 aa14.21□□□□□ -0.13
CLK3-214ENST00000564096 LARSQ9P2J5 1176 aaKnown RBP14.21□□□□□ -0.13
CLK3-214ENST00000564096 TMEM150BA6NC51 233 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 ZBTB39O15060 712 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 KLRC4O43908 158 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 HIP1RO75146 1068 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 STBD1O95210 358 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 ATP4AP20648 1035 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 RAD51AP2Q09MP3 1159 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 PPFIA1Q13136 1202 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 DMP1Q13316 513 aaPredicted RBP14.2□□□□□ -0.14
CLK3-214ENST00000564096 GIT2Q14161 759 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 MFSD10Q14728 455 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 DPCR1Q3MIW9 517 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 ANO6Q4KMQ2 910 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 ARSHQ5FYA8 562 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 HERC4Q5GLZ8 1057 aaPredicted RBP14.2□□□□□ -0.14
CLK3-214ENST00000564096 CT47A1Q5JQC4 288 aaPredicted RBP14.2□□□□□ -0.14
CLK3-214ENST00000564096 GNASQ5JWF2 1037 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 FAM102BQ5T8I3 360 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 RETREG2Q8NC44 543 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 TCP11Q8WWU5 503 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 MTG1Q9BT17 334 aaPredicted RBP14.2□□□□□ -0.14
CLK3-214ENST00000564096 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLK3-214ENST00000564096 C17orf75Q9HAS0 396 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 KCNG1Q9UIX4 513 aa14.2□□□□□ -0.14
CLK3-214ENST00000564096 NPHP3-ACAD11A0A0J9YXS1 232 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 H0YCG3 227 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 ADAMTS4O75173 837 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 PGK1P00558 417 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 ABCD1P33897 745 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 ZNF131P52739 623 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 RTP1P59025 263 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 PURAQ00577 322 aaKnown RBP14.19□□□□□ -0.14
CLK3-214ENST00000564096 BEX3Q00994 111 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 CACNB1Q02641 598 aaPredicted RBP14.19□□□□□ -0.14
CLK3-214ENST00000564096 ALCAMQ13740 583 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 FBXO46Q6PJ61 603 aaPredicted RBP14.19□□□□□ -0.14
CLK3-214ENST00000564096 SFR1Q86XK3 245 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 MYCT1Q8N699 235 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 FAM200AQ8TCP9 573 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 SH3TC2Q8TF17 1288 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 IFT74Q96LB3 600 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 DNAJC25Q9H1X3 360 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 DHX33Q9H6R0 707 aaKnown RBP14.19□□□□□ -0.14
CLK3-214ENST00000564096 OLFML3Q9NRN5 406 aa14.19□□□□□ -0.14
CLK3-214ENST00000564096 UBE4BO95155 1302 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 RRN3P2A6NIE6 340 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 PSMA7O14818 248 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 MAGEB2O15479 319 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 MAFO75444 373 aaPredicted RBP14.18□□□□□ -0.14
CLK3-214ENST00000564096 CABYRO75952 493 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 PLS3P13797 630 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 SCP2P22307 547 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 PSEN2P49810 448 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 DNM2P50570 870 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 LBX1P52954 281 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 TPM4P67936 248 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 PPP2R5AQ15172 486 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 TARBP2Q15633 366 aaKnown RBP14.18□□□□□ -0.14
CLK3-214ENST00000564096 GRIK4Q16099 956 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 KIAA0753Q2KHM9 967 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 COBLL1Q53SF7 1204 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 ODR4Q5SWX8 454 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 FAM178BQ8IXR5 827 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 SH2D3AQ9BRG2 576 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 POLR3FQ9H1D9 316 aaPredicted RBP14.18□□□□□ -0.14
CLK3-214ENST00000564096 MRPL44Q9H9J2 332 aaKnown RBP14.18□□□□□ -0.14
CLK3-214ENST00000564096 ARID2Q68CP9 1835 aa14.18□□□□□ -0.14
CLK3-214ENST00000564096 PHLPP2Q6ZVD8 1323 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 NRCAMQ92823 1304 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 MYADML2A6NDP7 307 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 MOXD2PA6NHM9 499 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 K7ENM7 598 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 MAPTP10636 758 aaKnown RBP14.17□□□□□ -0.14
CLK3-214ENST00000564096 GNAT1P11488 350 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 INSRRP14616 1297 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 TMOD1P28289 359 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 ZNF165P49910 485 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 SMTNP53814 917 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 EHHADHQ08426 723 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 L1TD1Q5T7N2 865 aaKnown RBP14.17□□□□□ -0.14
CLK3-214ENST00000564096 ISM2Q6H9L7 571 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 MAEAQ7L5Y9 396 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 C7orf31Q8N865 590 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 ARRDC4Q8NCT1 418 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 PSPC1Q8WXF1 523 aaKnown RBP14.17□□□□□ -0.14
CLK3-214ENST00000564096 MAP7D2Q96T17 732 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 BPIFA3Q9BQP9 254 aa14.17□□□□□ -0.14
CLK3-214ENST00000564096 BICDL2A1A5D9 508 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 GOLGA6L3A6NEY3 463 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 BECN2A8MW95 431 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 RSPH10B2B2RC85 870 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 KBTBD13C9JR72 458 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 HAS3O00219 553 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 EIF3DO15371 548 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-214ENST00000564096 GCNT3O95395 438 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 C22orf31O95567 290 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 RSPH10BP0C881 870 aa14.16□□□□□ -0.14
CLK3-214ENST00000564096 SMIM10L2AP0DMW4 78 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms