RNA–Protein interactions for RNA: ENST00000563917.2

CLN6-203, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-203ENST00000563917 SRGAP2BP0DMP2 458 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 DNM2P50570 870 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 NLRP11P59045 1033 aaKnown RBP10.78□□□□□ -0.68
CLN6-203ENST00000563917 CDC42EP1Q00587 391 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 UBE3AQ05086 875 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 HYAL1Q12794 435 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 GALNT17Q6IS24 598 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 THNSL1Q8IYQ7 743 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 FAM177A1Q8N128 213 aaPredicted RBP10.78□□□□□ -0.68
CLN6-203ENST00000563917 KLHL23Q8NBE8 558 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 TBCKQ8TEA7 893 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 POF1BQ8WVV4 589 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 CRYGNQ8WXF5 182 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 ZNF274Q96GC6 653 aaPredicted RBP10.78□□□□□ -0.68
CLN6-203ENST00000563917 LRFN3Q9BTN0 628 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 TMX1Q9H3N1 280 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 NCOA5Q9HCD5 579 aaKnown RBP10.78□□□□□ -0.68
CLN6-203ENST00000563917 RGS18Q9NS28 235 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 TMEM161AQ9NX61 479 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 PUF60Q9UHX1 559 aaKnown RBP10.78□□□□□ -0.68
CLN6-203ENST00000563917 PCDHA4Q9UN74 947 aa10.78□□□□□ -0.68
CLN6-203ENST00000563917 BRWD1Q9NSI6 2320 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 MSH4O15457 936 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 MARCH6O60337 910 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 VTNP04004 478 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 ITGB1P05556 798 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 ATP4AP20648 1035 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 CLCN3P51790 818 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 EVCP57679 992 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 BMS1Q14692 1282 aaKnown RBP10.77□□□□□ -0.69
CLN6-203ENST00000563917 CLUL1Q15846 466 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 NTRK3Q16288 839 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 MIER3Q7Z3K6 550 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 ADHFE1Q8IWW8 467 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 BLIDQ8IZY5 108 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 RDM1Q8NG50 284 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 SPPL3Q8TCT6 385 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 NLRP7Q8WX94 980 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 TM6SF1Q9BZW5 370 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 ELAC1Q9H777 363 aaKnown RBP10.77□□□□□ -0.69
CLN6-203ENST00000563917 CDHR5Q9HBB8 845 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 ZSWIM6Q9HCJ5 1215 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 CD207Q9UJ71 328 aa10.77□□□□□ -0.69
CLN6-203ENST00000563917 SPTBN5Q9NRC6 3674 aaKnown RBP10.77□□□□□ -0.69
CLN6-203ENST00000563917 CCDC194A0A1B0GVG4 234 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 C9IYK1 514 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 DCXO43602 365 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 DKC1O60832 514 aaKnown RBP eCLIP10.76□□□□□ -0.69
CLN6-203ENST00000563917 LINC00271P0C7V0 271 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 LAG3P18627 525 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 EIF4BP23588 611 aaKnown RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 PRKCEQ02156 737 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 KRT17Q04695 432 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 STK3Q13188 491 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 SMAD4Q13485 552 aaKnown RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 COL19A1Q14993 1142 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 NONOQ15233 471 aaKnown RBP eCLIP10.76□□□□□ -0.696e-7■■■□□ 17.3
CLN6-203ENST00000563917 Q4G0T1 1027 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 XKR3Q5GH77 459 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 PDE12Q6L8Q7 609 aaKnown RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 KRT25Q7Z3Z0 450 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 RBM23Q86U06 439 aaKnown RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 FAM228AQ86W67 206 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 SLC5A5Q92911 643 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 JPH2Q9BR39 696 aaPredicted RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 GCOM2Q9BZD3 368 aaPredicted RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 INO80BQ9C086 356 aaPredicted RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 TMEM117Q9H0C3 514 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 SLKQ9H2G2 1235 aaPredicted RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 TLE6Q9H808 572 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 TLR9Q9NR96 1032 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 PDRG1Q9NUG6 133 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 DACT1Q9NYF0 836 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 SEPT9Q9UHD8 586 aaPredicted RBP10.76□□□□□ -0.69
CLN6-203ENST00000563917 LOXHD1Q8IVV2 1947 aa10.76□□□□□ -0.69
CLN6-203ENST00000563917 EVPLQ92817 2033 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 PRR33A8MZF0 331 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 ZBTB42B2RXF5 422 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 MBTPS2O43462 519 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 MGEA5O60502 916 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 EIF5BO60841 1220 aaKnown RBP10.75□□□□□ -0.69
CLN6-203ENST00000563917 GPR32O75388 356 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 FGF18O76093 207 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 PPM1AP35813 382 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 NRIP1P48552 1158 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 GATMP50440 423 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 ADAM15Q13444 863 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 TOB2Q14106 344 aaPredicted RBP10.75□□□□□ -0.69
CLN6-203ENST00000563917 SMAD2Q15796 467 aaKnown RBP10.75□□□□□ -0.69
CLN6-203ENST00000563917 CTC1Q2NKJ3 1217 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 MTERF2Q49AM1 385 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 FAM102BQ5T8I3 360 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 EXOC8Q8IYI6 725 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 CRIPAKQ8N1N5 446 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 LRRC43Q8N309 656 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 LRRC71Q8N4P6 559 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 EFHBQ8N7U6 833 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 TMEM87AQ8NBN3 555 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 RNF169Q8NCN4 708 aa10.75□□□□□ -0.69
CLN6-203ENST00000563917 TMEM40Q8WWA1 233 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms