RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TRAF5O00463 557 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 SH2B2O14492 632 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZBTB43O43298 467 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZEB2O60315 1214 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ASLP04424 464 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 MAPTP10636 758 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 ESRRAP11474 423 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 SMPD1P17405 629 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 XBP1P17861 261 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 PLCG1P19174 1290 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 KIF5BP33176 963 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 TFAP4Q01664 338 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 AKAP17AQ02040 695 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 POU5F1BQ06416 359 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 STRN3Q13033 797 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 TOB2Q14106 344 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 MORC3Q14149 939 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 STAT4Q14765 748 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZYXQ15942 572 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 ME3Q16798 604 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZNF423Q2M1K9 1284 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 FAM209AQ5JX71 171 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 IFIT1BQ5T764 474 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 FOXB2Q5VYV0 432 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ADAMTSL4Q6UY14 1074 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 STOX1Q6ZVD7 989 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 VN1R5Q7Z5H4 357 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 C14orf80Q86SX3 495 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 MAPKAPK5Q8IW41 473 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 GPC2Q8N158 579 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 MICALL1Q8N3F8 863 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 CRACR2BQ8N4Y2 399 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 STK35Q8TDR2 534 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 IGDCC4Q8TDY8 1250 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 FAM151AQ8WW52 585 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ANKS1AQ92625 1134 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 USP7Q93009 1102 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 GTF3C6Q969F1 213 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 CLUHP3Q96NS8 147 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 SLC9A7Q96T83 725 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 GAS2L1Q99501 681 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 LZTS2Q9BRK4 669 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 OSBPL5Q9H0X9 879 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 CABP5Q9NP86 173 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 TOR4AQ9NXH8 423 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 HERC5Q9UII4 1024 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZNF180Q9UJW8 692 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 TPCN1Q9ULQ1 816 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 NAP1L2Q9ULW6 460 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 PCDHA4Q9UN74 947 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 APOBEC2Q9Y235 224 aaKnown RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 RBBP6Q7Z6E9 1792 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 ROBO3Q96MS0 1386 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 KLF18A0A0U1RQI7 1052 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 CCDC189A1A4V9 331 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 WDHD1O75717 1129 aaPredicted RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 RAG1P15918 1043 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 EIF2AK2P19525 551 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 PDIA3P30101 505 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 CDC27P30260 824 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 CDK8P49336 464 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 METAP2P50579 478 aaKnown RBP eCLIP5.85□□□□□ -1.47
LDLR-209ENST00000558528 PMS1P54277 932 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 ZNF280AP59817 542 aaPredicted RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 GABREP78334 506 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 ATP11AP98196 1134 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 PTPN11Q06124 597 aaPredicted RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 FAPQ12884 760 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 PICALMQ13492 652 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 RAPGEF1Q13905 1077 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 IKBKEQ14164 716 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 GRIK5Q16478 980 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 HP1BP3Q5SSJ5 553 aaPredicted RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 CEP135Q66GS9 1140 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 MRPL14Q6P1L8 145 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 TBC1D10CQ8IV04 446 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 CCDC83Q8IWF9 413 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 TRIM22Q8IYM9 498 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 NEDD1Q8NHV4 660 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 CTCFLQ8NI51 663 aaPredicted RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 SMAD5Q99717 465 aaKnown RBP5.85□□□□□ -1.47
LDLR-209ENST00000558528 MENTQ9BUN1 341 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 IFT22Q9H7X7 185 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 KAT14Q9H8E8 782 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 MYOZ2Q9NPC6 264 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 RNF186Q9NXI6 227 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 SYNPO2Q9UMS6 1093 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.85□□□□□ -1.47
LDLR-209ENST00000558528 PPP2R3BQ9Y5P8 575 aa5.85□□□□□ -1.47
LDLR-209ENST00000558528 KIAA0100Q14667 2235 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 TNKSO95271 1327 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GOLGA8AA7E2F4 631 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GOLGA8BA8MQT2 603 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 H3BQV1 296 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 DNAJC8O75937 253 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 FBXO21O94952 628 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 CYP11A1P05108 521 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 CPA1P15085 419 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 SMARCA1P28370 1054 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GJB2P29033 226 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms