RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 DNAJB1P25685 340 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 GTF2F1P35269 517 aaKnown RBP eCLIP12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 EVCP57679 992 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 DLX2Q07687 328 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 CLUL1Q15846 466 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 FAM102BQ5T8I3 360 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 RUFY3Q7L099 469 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 TRIM22Q8IYM9 498 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 POF1BQ8WVV4 589 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 LENG9Q96B70 501 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 FAM122AQ96E09 287 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 MAP7D2Q96T17 732 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 C11orf16Q9NQ32 467 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 SH3GLB2Q9NR46 395 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 AAASQ9NRG9 546 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 DISC1Q9NRI5 854 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 NRBP2Q9NSY0 501 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 AKT3Q9Y243 479 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 PCDHB12Q9Y5F1 795 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 C9IYK1 514 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 MSH4O15457 936 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 LINC01565O15544 149 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 MBTPS2O43462 519 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 CHMP2AO43633 222 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 GAS7O60861 476 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 TBX10O75333 385 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 OATP04181 439 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 TMOD1P28289 359 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 IRS1P35568 1242 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 PLA2G5P39877 138 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 NDUFV1P49821 464 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 CLCN3P51790 818 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ZP2Q05996 745 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 SSRP1Q08945 709 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ADAM15Q13444 863 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 SMAD2Q15796 467 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 EFCAB12Q6NXP0 572 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ADGRD2Q7Z7M1 963 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 FAM228AQ86W67 206 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ADHFE1Q8IWW8 467 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 TBCKQ8TEA7 893 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 RIT2Q99578 217 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 C22orf23Q9BZE7 217 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ATP6V0A4Q9HBG4 840 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 ZSWIM6Q9HCJ5 1215 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 CD207Q9UJ71 328 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 CYP46A1Q9Y6A2 500 aa12.51□□□□□ -0.41
CCDC88C-213ENST00000557455 C19orf67A6NJJ6 358 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 CPLX1O14810 134 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 EPB41L2O43491 1005 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 EDIL3O43854 480 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 DEXIO95424 95 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 SFNP31947 248 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 NRIP1P48552 1158 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 NLRP11P59045 1033 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 PRKCEQ02156 737 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 UBE3AQ05086 875 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 SMAD4Q13485 552 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 TOB2Q14106 344 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 LRCH2Q5VUJ6 765 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 ZNF710Q8N1W2 664 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 LRRC71Q8N4P6 559 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 MICAL1Q8TDZ2 1067 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 SLC5A5Q92911 643 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 TEKT3Q9BXF9 490 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 ELAC1Q9H777 363 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 TMEM161AQ9NX61 479 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 PCDHA4Q9UN74 947 aa12.5□□□□□ -0.41
CCDC88C-213ENST00000557455 PRR33A8MZF0 331 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 DCXO43602 365 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 ZNF862O60290 1169 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 FGFR1P11362 822 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 ZSCAN20P17040 1043 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 EIF4BP23588 611 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 JAK3P52333 1124 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 FAM189BP81408 668 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 DSC3Q14574 896 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 UGCGQ16739 394 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 CSPP1Q1MSJ5 1256 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 Q4G0T1 1027 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 CPLX2Q6PUV4 134 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 RBM23Q86U06 439 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 THNSL1Q8IYQ7 743 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 LINC01465Q8N7H1 131 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 EFHBQ8N7U6 833 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 GJA10Q969M2 543 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 ZNF274Q96GC6 653 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 POP1Q99575 1024 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 UPF3BQ9BZI7 483 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 UNC45AQ9H3U1 944 aa12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 TYW1Q9NV66 732 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 ARIH1Q9Y4X5 557 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-213ENST00000557455 HOXA2O43364 376 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 PSMD10O75832 226 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 FGF18O76093 207 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 LAG3P18627 525 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 GPC3P51654 580 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 TBC1D8BQ0IIM8 1120 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 STK3Q13188 491 aa12.48□□□□□ -0.41
CCDC88C-213ENST00000557455 MIER3Q7Z3K6 550 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms