RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TMEM206Q9H813 350 aa13.89□□□□□ -0.19
SHMT2-229ENST00000557348 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT2-229ENST00000557348 TTC26A0AVF1 554 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 USP27XA6NNY8 438 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 TADA3O75528 432 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 IPO7O95373 1038 aaKnown RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 SNAPC2Q13487 334 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 MEA1Q16626 185 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ERCC6LQ2NKX8 1250 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 MIS18BP1Q6P0N0 1132 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ZNF720Q7Z2F6 126 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 CCDC170Q8IYT3 715 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 TMEM174Q8WUU8 243 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 HVCN1Q96D96 273 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ASCC2Q9H1I8 757 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ST6GALNAC4Q9H4F1 302 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 C17orf75Q9HAS0 396 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 JPH1Q9HDC5 661 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 PKD2L1Q9P0L9 805 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 SLC9A2Q9UBY0 812 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ARMCX3Q9UH62 379 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 FEZ2Q9UHY8 353 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 CCDC151A5D8V7 595 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 TGFB3P10600 412 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 KCNA2P16389 499 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 CYLC1P35663 651 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 HERVK_113P62684 666 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 NAA30Q147X3 362 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 LDLRAD1Q5T700 205 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 KCNV1Q6PIU1 500 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 GLIS3Q8NEA6 775 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 NEK11Q8NG66 645 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 ARFGAP3Q9NP61 516 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 WRAP73Q9P2S5 460 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-229ENST00000557348 SIK3Q9Y2K2 1263 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 SLC45A1Q9Y2W3 748 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 DAAM1Q9Y4D1 1078 aa13.88□□□□□ -0.19
SHMT2-229ENST00000557348 COL11A1P12107 1806 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-229ENST00000557348 PTPRFP10586 1907 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 RSPH10B2B2RC85 870 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 H0YCG3 227 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 HIP1RO75146 1068 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 NR3C1P04150 777 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 RSPH10BP0C881 870 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 MYBP10242 640 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 PLS3P13797 630 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 HNRNPH3P31942 346 aaKnown RBP13.87□□□□□ -0.19
SHMT2-229ENST00000557348 ALDH5A1P51649 535 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-229ENST00000557348 KRT83P78385 493 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 GOLGA8FQ08AF8 430 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 GOLGA8DPQ0D2H9 430 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 PTPN21Q16825 1174 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 EAPPQ56P03 285 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-229ENST00000557348 REXO1L1PQ8IX06 675 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 SHCBP1Q8NEM2 672 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 KIFAP3Q92845 792 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 OPTNQ96CV9 577 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 GBP3Q9H0R5 595 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 MROH8Q9H579 483 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 ADGRG1Q9Y653 693 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 ASTN1O14525 1302 aa13.87□□□□□ -0.19
SHMT2-229ENST00000557348 PRPF6O94906 941 aaKnown RBP13.86□□□□□ -0.19
SHMT2-229ENST00000557348 CCNE2O96020 404 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 XRCC5P13010 732 aaKnown RBP13.86□□□□□ -0.19
SHMT2-229ENST00000557348 EDNRBP24530 442 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 CASP5P51878 434 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 SMTNP53814 917 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 SYT10Q6XYQ8 523 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 SLC9A9Q8IVB4 645 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 MCPH1Q8NEM0 835 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 SYN2Q92777 582 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-229ENST00000557348 ZFP91Q96JP5 570 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-229ENST00000557348 FGFBP2Q9BYJ0 223 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 BTBD7Q9P203 1132 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 MYO1AQ9UBC5 1043 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 EXOC7Q9UPT5 735 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 PPME1Q9Y570 386 aa13.86□□□□□ -0.19
SHMT2-229ENST00000557348 GTPBP10A4D1E9 387 aaKnown RBP13.85□□□□□ -0.19
SHMT2-229ENST00000557348 SOWAHDA6NJG2 315 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 ATP9AO75110 1047 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CAPN2P17655 700 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 PSMC2P35998 433 aaKnown RBP13.85□□□□□ -0.19
SHMT2-229ENST00000557348 RTP1P59025 263 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 MAPK7Q13164 816 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 NEDD9Q14511 834 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 XKR9Q5GH70 373 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 NCAPG2Q86XI2 1143 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 FMNL3Q8IVF7 1028 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 C12orf56Q8IXR9 622 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 SLC10A4Q96EP9 437 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CLMNQ96JQ2 1002 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 ACCSQ96QU6 501 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 FIZ1Q96SL8 496 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 STRA6Q9BX79 667 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CEP72Q9P209 647 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 PLAGL2Q9UPG8 496 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 FRMD4BQ9Y2L6 1034 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 POLR2AP24928 1970 aaKnown RBP13.85□□□□□ -0.19
SHMT2-229ENST00000557348 K7ENM7 598 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 PPP1R37O75864 691 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms