RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 MYH11P35749 1972 aa19.52■□□□□ 0.71
SHMT2-225ENST00000556798 RANBP2P49792 3224 aaKnown RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 SPTLC2O15270 562 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 NBNO60934 754 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 MAFO75444 373 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 YEATS4O95619 227 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 VTNP04004 478 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 NCLP19338 710 aaKnown RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 LONP1P36776 959 aaKnown RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 NUCB2P80303 420 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 MGAT3Q09327 533 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 MKRN4PQ13434 485 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 EMC2Q15006 297 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 KRI1Q8N9T8 703 aaKnown RBP19.51■□□□□ 0.71
SHMT2-225ENST00000556798 PNMA5Q96PV4 448 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 IL23AQ9NPF7 189 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 AKT3Q9Y243 479 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 GINS2Q9Y248 185 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 PTPRSQ13332 1948 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 KDM3AQ9Y4C1 1321 aa19.51■□□□□ 0.71
SHMT2-225ENST00000556798 IGKV6-21A0A0C4DH24 114 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 E9PMD0 336 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 MUTP22033 750 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 RFC2P35250 354 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 RFC5P40937 340 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 UBA7P41226 1012 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 GRB10Q13322 594 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 FAM26DQ5JW98 314 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 C9orf50Q5SZB4 431 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 USP49Q70CQ1 688 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 C16orf59Q7L2K0 433 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 KCNK18Q7Z418 384 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 SLC7A3Q8WY07 619 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 EPSTI1Q96J88 318 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 ZNF668Q96K58 619 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-225ENST00000556798 MAP7D2Q96T17 732 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 PRO3102Q9H379 93 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 DHX33Q9H6R0 707 aaKnown RBP19.5■□□□□ 0.71
SHMT2-225ENST00000556798 DBR1Q9UK59 544 aaKnown RBP19.5■□□□□ 0.71
SHMT2-225ENST00000556798 COLQQ9Y215 455 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-225ENST00000556798 TRPV2Q9Y5S1 764 aa19.5■□□□□ 0.71
SHMT2-225ENST00000556798 MORC2Q9Y6X9 1032 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-225ENST00000556798 M0QZ92 97 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 USO1O60763 962 aaKnown RBP19.49■□□□□ 0.71
SHMT2-225ENST00000556798 RPLP2P05387 115 aaKnown RBP19.49■□□□□ 0.71
SHMT2-225ENST00000556798 XRCC6P12956 609 aaKnown RBP eCLIP19.49■□□□□ 0.71
SHMT2-225ENST00000556798 TMOD1P28289 359 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 KARSQ15046 597 aaKnown RBP19.49■□□□□ 0.71
SHMT2-225ENST00000556798 IER5Q5VY09 327 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 ATL3Q6DD88 541 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 SYMPKQ92797 1274 aaKnown RBP19.49■□□□□ 0.71
SHMT2-225ENST00000556798 TMEM143Q96AN5 459 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 CDK5RAP3Q96JB5 506 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 MTRQ99707 1265 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.49■□□□□ 0.712e-7■■□□□ 14.2
SHMT2-225ENST00000556798 BHMT2Q9H2M3 363 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 XPNPEP1Q9NQW7 623 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 CFAP45Q9UL16 551 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 PPME1Q9Y570 386 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 GBF1Q92538 1859 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 TRIOBPQ9H2D6 2365 aa19.49■□□□□ 0.71
SHMT2-225ENST00000556798 ARHGEF35A5YM69 484 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 PPP6R2O75170 966 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 GHRP10912 638 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 BMP8BP34820 402 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 KRT85P78386 507 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 KIZQ2M2Z5 673 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 TMEM119Q4V9L6 283 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 HYIQ5T013 277 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 ZNF365Q70YC5 407 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 RPUSD2Q8IZ73 545 aaKnown RBP19.48■□□□□ 0.71
SHMT2-225ENST00000556798 NME8Q8N427 588 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 RASSF8Q8NHQ8 419 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 CELF4Q9BZC1 486 aaKnown RBP19.48■□□□□ 0.71
SHMT2-225ENST00000556798 CDHR5Q9HBB8 845 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 ATP6V0A4Q9HBG4 840 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 ATP6V1DQ9Y5K8 247 aa19.48■□□□□ 0.71
SHMT2-225ENST00000556798 DGAT1O75907 488 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 PARNO95453 639 aaKnown RBP19.47■□□□□ 0.71
SHMT2-225ENST00000556798 CXCL10P02778 98 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 NLRP11P59045 1033 aaKnown RBP19.47■□□□□ 0.71
SHMT2-225ENST00000556798 SHHQ15465 462 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 TCTN1Q2MV58 587 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 TMEM240Q5SV17 173 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 PSRC1Q6PGN9 363 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-225ENST00000556798 PADI6Q6TGC4 694 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 MAEAQ7L5Y9 396 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 KCNG4Q8TDN1 519 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 LRRC15Q8TF66 581 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 CALML4Q96GE6 196 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 OSMRQ99650 979 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 JPH2Q9BR39 696 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-225ENST00000556798 CCSER1Q9C0I3 900 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 NT5C3AQ9H0P0 336 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 SUCLA2Q9P2R7 463 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-225ENST00000556798 DNM3Q9UQ16 869 aa19.47■□□□□ 0.71
SHMT2-225ENST00000556798 GPR32O75388 356 aa19.46■□□□□ 0.71
SHMT2-225ENST00000556798 EYA4O95677 639 aa19.46■□□□□ 0.71
SHMT2-225ENST00000556798 PFKMP08237 780 aa19.46■□□□□ 0.71
SHMT2-225ENST00000556798 PLCG1P19174 1290 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms