RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 CHRNA1P02708 482 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 GHRP10912 638 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 KLRC1P26715 233 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 SFNP31947 248 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 NEK4P51957 841 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 USP46P62068 366 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 MRPS6P82932 125 aaKnown RBP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 NONOQ15233 471 aaKnown RBP eCLIP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 AAK1Q2M2I8 961 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 MARCH8Q5T0T0 291 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 LRCH2Q5VUJ6 765 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.27□□□□□ -1.094e-10■■■■□ 25.5
SCFD1-222ENST00000556768 TSHZ1Q6ZSZ6 1077 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 KRT25Q7Z3Z0 450 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 METTL13Q8N6R0 699 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 ATXN2LQ8WWM7 1075 aaKnown RBP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 TOP1MTQ969P6 601 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 PCYT2Q99447 389 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 NAP1L4Q99733 375 aaKnown RBP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 DISC1Q9NRI5 854 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 GINS2Q9Y248 185 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 MYH6P13533 1939 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 IGKV6D-21A0A0A0MT36 114 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MAGEB2O15479 319 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 PFKFB2O60825 505 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CCNE2O96020 404 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 JAK3P52333 1124 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 SCRN1Q12765 414 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 PAK2Q13177 524 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TRIM29Q14134 588 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 ADGRE1Q14246 886 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MTHFD1LQ6UB35 978 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 RUFY4Q6ZNE9 571 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TMCO2Q7Z6W1 182 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 RDH13Q8NBN7 331 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TATDN2Q93075 761 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 IL17RAQ96F46 866 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 SAMD11Q96NU1 681 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 UIMC1Q96RL1 719 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 UCN2Q96RP3 112 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TEKT3Q9BXF9 490 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 LMCD1Q9NZU5 365 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 GABBR1Q9UBS5 961 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MTUS1Q9ULD2 1270 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 PCDHGC3Q9UN70 934 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MAFBQ9Y5Q3 323 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CDY2AQ9Y6F7 541 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 COL1A2P08123 1366 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CHMP2AO43633 222 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 POU3F3P20264 500 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 AK2P54819 239 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MRPS5P82675 430 aaKnown RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TMEM62Q0P6H9 643 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 NFX1Q12986 1120 aaKnown RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 LPIN1Q14693 890 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 PTPROQ16827 1216 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 LETM2Q2VYF4 491 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 Q4G0T1 1027 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TJAP1Q5JTD0 557 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 FBXO47Q5MNV8 452 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 SND1Q7KZF4 910 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CCDC60Q8IWA6 550 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 DAGLBQ8NCG7 672 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 RDM1Q8NG50 284 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 DCBLD2Q96PD2 775 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 MAP7D2Q96T17 732 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CELF4Q9BZC1 486 aaKnown RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 VRTNQ9H8Y1 702 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 THEGQ9P2T0 379 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 ORC3Q9UBD5 711 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 DDX25Q9UHL0 483 aaKnown RBP8.26□□□□□ -1.09
SCFD1-222ENST00000556768 METRNQ9UJH8 293 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TPCN1Q9ULQ1 816 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 TRPV2Q9Y5S1 764 aa8.26□□□□□ -1.09
SCFD1-222ENST00000556768 CYP3A7-CYP3A51PA0A087WV96 503 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 LCHNA4D1U4 455 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 LINC01553A4QN01 128 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 RFXAPO00287 272 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 ENPP3O14638 875 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 GPR182O15218 404 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 MSH4O15457 936 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 DKC1O60832 514 aaKnown RBP eCLIP8.25□□□□□ -1.09
SCFD1-222ENST00000556768 GABBR2O75899 941 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 BAG4O95429 457 aaKnown RBP8.25□□□□□ -1.09
SCFD1-222ENST00000556768 STAG3L1P0CL83 205 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 GCFC2P16383 781 aaKnown RBP8.25□□□□□ -1.09
SCFD1-222ENST00000556768 CYP3A7P24462 503 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 GCGRP47871 477 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 DNM2P50570 870 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 ERVK-21P61565 698 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 HTRA4P83105 476 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-222ENST00000556768 CDC42EP1Q00587 391 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 MOXD1Q6UVY6 613 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 MIER3Q7Z3K6 550 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 FIBCD1Q8N539 461 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 TRAPPC12Q8WVT3 735 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 KHSRPQ92945 711 aaKnown RBP eCLIP8.25□□□□□ -1.091e-7■■■□□ 15
SCFD1-222ENST00000556768 TFIP11Q9UBB9 837 aaKnown RBP8.25□□□□□ -1.09
SCFD1-222ENST00000556768 LRFN2Q9ULH4 789 aa8.25□□□□□ -1.09
SCFD1-222ENST00000556768 KCNJ14Q9UNX9 436 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 185.9 ms