RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SPARCL1Q14515 664 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 KCNB1Q14721 858 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 GRAMD1AQ96CP6 724 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 MAP3K14Q99558 947 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 CALN1Q9BXU9 219 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 ACAD9Q9H845 621 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 EPB41L5Q9HCM4 733 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 IP6K2Q9UHH9 426 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 PCDHA6Q9UN73 950 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 PCDHA8Q9Y5H6 950 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 POC1B-GALNT4F8VUJ3 575 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 SLC1A1P43005 524 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 VPS41P49754 854 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 MKRN3Q13064 507 aaKnown RBP11.48□□□□□ -0.57
ACTN1-216ENST00000556083 CRLF3Q8IUI8 442 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 RAB42Q8N4Z0 105 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 NEDD1Q8NHV4 660 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 ZNF512BQ96KM6 892 aaPredicted RBP11.48□□□□□ -0.57
ACTN1-216ENST00000556083 TNIP3Q96KP6 325 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 TRIM54Q9BYV2 358 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 ZMYND12Q9H0C1 365 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 UBN1Q9NPG3 1134 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 ADAM22Q9P0K1 906 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 CLRN2A0PK11 232 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 EIF4A3P38919 411 aaKnown RBP11.48□□□□□ -0.57
ACTN1-216ENST00000556083 BASP1P80723 227 aaKnown RBP11.48□□□□□ -0.57
ACTN1-216ENST00000556083 EPHA7Q15375 998 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 MAPRE2Q15555 327 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 RASEFQ8IZ41 740 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 FBXL13Q8NEE6 735 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 PIGBQ92521 554 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 DDX27Q96GQ7 796 aaKnown RBP11.48□□□□□ -0.57
ACTN1-216ENST00000556083 KATNAL1Q9BW62 490 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 FAM129AQ9BZQ8 928 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 SLITRK6Q9H5Y7 841 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 UBE4BO95155 1302 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
ACTN1-216ENST00000556083 MFAP3LO75121 409 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 CHRNA3P32297 505 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 PHEXP78562 749 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 DHX9Q08211 1270 aaKnown RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SEPT12Q8IYM1 358 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 RYBPQ8N488 228 aaPredicted RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 CRAMP1Q96RY5 1269 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 RMDN3Q96TC7 470 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 WNT8AQ9H1J5 351 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 KDM6AO15550 1401 aaPredicted RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SLC16A3O15427 465 aaKnown RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 KRT16P08779 473 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 HOXC6P09630 235 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SERPINB4P48594 390 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 ART3Q13508 389 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 ZNF827Q17R98 1081 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SLFNL1Q499Z3 407 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 MAP3K20Q9NYL2 800 aaKnown RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 OPHN1O60890 802 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 PSMA2P25787 234 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 KCNJ6P48051 423 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 PLTPP55058 493 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 VEPH1Q14D04 833 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SPOPLQ6IQ16 392 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 PDXDC1Q6P996 788 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 BHMT2Q9H2M3 363 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 GPBP1L1Q9HC44 474 aaPredicted RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 NXF1Q9UBU9 619 aaKnown RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L15C9J2P7 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L13C9JLJ4 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L11C9JVI0 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L18D6R9N7 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L22D6RA61 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L17D6RBQ6 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L19D6RCP7 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L20D6RJB6 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 GOLGA8SH3BPF8 625 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 SDC4P31431 198 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 CYP2C19P33261 490 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 DYNLL1P63167 89 aaKnown RBP11.47□□□□□ -0.57
ACTN1-216ENST00000556083 USP17L24Q0WX57 530 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 C4orf50Q6ZRC1 276 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 TBC1D19Q8N5T2 526 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 CD209Q9NNX6 404 aa11.47□□□□□ -0.57
ACTN1-216ENST00000556083 COL15A1P39059 1388 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 UBN2Q6ZU65 1347 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 GOLGA8TH3BQL2 631 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 NVLO15381 856 aaKnown RBP11.46□□□□□ -0.57
ACTN1-216ENST00000556083 ENTPD3O75355 529 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 TBCCQ15814 346 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 RAD54LQ92698 747 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 TRIM55Q9BYV6 548 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 DBNDD1Q9H9R9 158 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.46□□□□□ -0.57
ACTN1-216ENST00000556083 TNS3Q68CZ2 1445 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 ZNF197O14709 1029 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 MAGEB2O15479 319 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 PYGLP06737 847 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 MMP10P09238 476 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 KNOP1Q1ED39 458 aaKnown RBP11.46□□□□□ -0.57
ACTN1-216ENST00000556083 DPCR1Q3MIW9 517 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 ACAD11Q709F0 780 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 FRMD5Q7Z6J6 570 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms