RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 SLFN12Q8IYM2 578 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 RDM1Q8NG50 284 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 PPP1R13LQ8WUF5 828 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 FAM167AQ96KS9 214 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 RNPC3Q96LT9 517 aaKnown RBP9.39□□□□□ -0.91
PSEN1-209ENST00000553855 UIMC1Q96RL1 719 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 FOXP1Q9H334 677 aaPredicted RBP9.39□□□□□ -0.91
PSEN1-209ENST00000553855 RNPEPQ9H4A4 650 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 IL23AQ9NPF7 189 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 DISC1Q9NRI5 854 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 NRBP2Q9NSY0 501 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 GJB4Q9NTQ9 266 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 PLA2G2EQ9NZK7 142 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 CEP131Q9UPN4 1083 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 BRCA2P51587 3418 aa9.39□□□□□ -0.91
PSEN1-209ENST00000553855 ADAMTS3O15072 1205 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 TBX3O15119 743 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 HBP1O60381 514 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 CAND2O75155 1236 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 LGR5O75473 907 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 SELPP16109 830 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 PDCP20941 246 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 GJB2P29033 226 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 CTHP32929 405 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 THPOP40225 353 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 NPY5RQ15761 445 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 GRIK4Q16099 956 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 CALCRLQ16602 461 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 ABHD15Q6UXT9 468 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 LRRC8DQ7L1W4 858 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 HSCBQ8IWL3 235 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 FBXO18Q8NFZ0 1043 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 SLC5A5Q92911 643 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 SETD4Q9NVD3 440 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 GABBR1Q9UBS5 961 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 TUBE1Q9UJT0 475 aa9.38□□□□□ -0.91
PSEN1-209ENST00000553855 RSPH10B2B2RC85 870 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 DHX15O43143 795 aaKnown RBP9.37□□□□□ -0.91
PSEN1-209ENST00000553855 TREHO43280 583 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 NEMFO60524 1076 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 CCNE2O96020 404 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 IQCF3P0C7M6 154 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 CCNYL3P0C7X3 344 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 RSPH10BP0C881 870 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 SKIP12755 728 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 INSRRP14616 1297 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ITGB8P26012 769 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ST3GAL1Q11201 340 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ORC2Q13416 577 aaPredicted RBP9.37□□□□□ -0.91
PSEN1-209ENST00000553855 PLCB4Q15147 1175 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 SHHQ15465 462 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 MSS51Q4VC12 460 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ZNF484Q5JVG2 852 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 LARP1BQ659C4 914 aaKnown RBP9.37□□□□□ -0.91
PSEN1-209ENST00000553855 TRMT1LQ7Z2T5 733 aaKnown RBP9.37□□□□□ -0.91
PSEN1-209ENST00000553855 DEFB128Q7Z7B8 93 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 SERINC5Q86VE9 423 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ATP8B4Q8TF62 1192 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 LMBR1Q8WVP7 490 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ZNF592Q92610 1267 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 SCLYQ96I15 445 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 CCDC43Q96MW1 224 aaKnown RBP9.37□□□□□ -0.91
PSEN1-209ENST00000553855 MBOAT7Q96N66 472 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 UNC45AQ9H3U1 944 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 GPSM3Q9Y4H4 160 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 COL1A2P08123 1366 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 ALPK3Q96L96 1907 aa9.37□□□□□ -0.91
PSEN1-209ENST00000553855 UMODL1Q5DID0 1318 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 SLC37A4O43826 429 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 PSMD10O75832 226 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 ACRP10323 421 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 CKBP12277 381 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 TMOD1P28289 359 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 MCM7P33993 719 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 KCNJ6P48051 423 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 TRAPPC10P48553 1259 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 ZNF200P98182 395 aaPredicted RBP9.36□□□□□ -0.91
PSEN1-209ENST00000553855 TMEM266Q2M3C6 531 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 LRIT3Q3SXY7 679 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 IER5Q5VY09 327 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 NCAPH2Q6IBW4 605 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 ZNF365Q70YC5 407 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 NOSTRINQ8IVI9 506 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 CCDC60Q8IWA6 550 aaPredicted RBP9.36□□□□□ -0.91
PSEN1-209ENST00000553855 ARMC2Q8NEN0 867 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 ETNPPLQ8TBG4 499 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 LENG9Q96B70 501 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.36□□□□□ -0.915e-7■■■□□ 18.9
PSEN1-209ENST00000553855 RAB34Q9BZG1 259 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 PRO3102Q9H379 93 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 PCDHA12Q9UN75 941 aa9.36□□□□□ -0.91
PSEN1-209ENST00000553855 IGKV6D-21A0A0A0MT36 114 aa9.35□□□□□ -0.91
PSEN1-209ENST00000553855 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.35□□□□□ -0.91
PSEN1-209ENST00000553855 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.35□□□□□ -0.91
PSEN1-209ENST00000553855 KIF28PB7ZC32 967 aa9.35□□□□□ -0.91
PSEN1-209ENST00000553855 K7ELQ4 463 aaPredicted RBP9.35□□□□□ -0.91
PSEN1-209ENST00000553855 DLL1O00548 723 aa9.35□□□□□ -0.91
PSEN1-209ENST00000553855 MAGEB2O15479 319 aa9.35□□□□□ -0.91
PSEN1-209ENST00000553855 EFCAB14O75071 495 aa9.35□□□□□ -0.91
PSEN1-209ENST00000553855 DXOO77932 396 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms