RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 OSMRQ99650 979 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 UPF3BQ9BZI7 483 aaKnown RBP14.39□□□□□ -0.11
LINC00643-202ENST00000553426 TMX1Q9H3N1 280 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 ERVK-5Q9HDB9 667 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 ALG13Q9NP73 1137 aaKnown RBP14.39□□□□□ -0.11
LINC00643-202ENST00000553426 RGS18Q9NS28 235 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 PLAGL2Q9UPG8 496 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 PCDHB12Q9Y5F1 795 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 MRPL42Q9Y6G3 142 aaKnown RBP14.39□□□□□ -0.11
LINC00643-202ENST00000553426 BRWD1Q9NSI6 2320 aa14.39□□□□□ -0.11
LINC00643-202ENST00000553426 GRXCR2A6NFK2 248 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 LINC00271P0C7V0 271 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 ZSCAN20P17040 1043 aaPredicted RBP14.38□□□□□ -0.11
LINC00643-202ENST00000553426 PRKCEQ02156 737 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 TBC1D8BQ0IIM8 1120 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 Q4G0T1 1027 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 EFCAB12Q6NXP0 572 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 MIER3Q7Z3K6 550 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 FAM178BQ8IXR5 827 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 GJD3Q8N144 294 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 RDM1Q8NG50 284 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 CDHR5Q9HBB8 845 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 ATP6V0A4Q9HBG4 840 aa14.38□□□□□ -0.11
LINC00643-202ENST00000553426 MYH9P35579 1960 aaKnown RBP14.38□□□□□ -0.11
LINC00643-202ENST00000553426 TBKBP1A7MCY6 615 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 HOXA2O43364 376 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 GPR32O75388 356 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 CSPG5O95196 566 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 CLCN3P51790 818 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 NLRP11P59045 1033 aaKnown RBP14.37□□□□□ -0.11
LINC00643-202ENST00000553426 CDC42EP1Q00587 391 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 NONOQ15233 471 aaKnown RBP eCLIP14.37□□□□□ -0.11
LINC00643-202ENST00000553426 KRT25Q7Z3Z0 450 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 DAGLBQ8NCG7 672 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 TMEM40Q8WWA1 233 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 LARP6Q9BRS8 491 aaKnown RBP14.37□□□□□ -0.11
LINC00643-202ENST00000553426 IGFLR1Q9H665 355 aa14.37□□□□□ -0.11
LINC00643-202ENST00000553426 CYP3A7-CYP3A51PA0A087WV96 503 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 CCDC194A0A1B0GVG4 234 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 EIF5BO60841 1220 aaKnown RBP14.36□□□□□ -0.11
LINC00643-202ENST00000553426 ITGB1P05556 798 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 IL9P15248 144 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 EIF4BP23588 611 aaKnown RBP14.36□□□□□ -0.11
LINC00643-202ENST00000553426 CYP3A7P24462 503 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 DNM2P50570 870 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 COL19A1Q14993 1142 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 CSPP1Q1MSJ5 1256 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 MOXD1Q6UVY6 613 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 FAM228AQ86W67 206 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 LRRC71Q8N4P6 559 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 KLHL23Q8NBE8 558 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 MICAL1Q8TDZ2 1067 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 SLKQ9H2G2 1235 aaPredicted RBP14.36□□□□□ -0.11
LINC00643-202ENST00000553426 UNC45AQ9H3U1 944 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 ELAC1Q9H777 363 aaKnown RBP14.36□□□□□ -0.11
LINC00643-202ENST00000553426 C11orf16Q9NQ32 467 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 TMEM161AQ9NX61 479 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 PRKAG3Q9UGI9 489 aa14.36□□□□□ -0.11
LINC00643-202ENST00000553426 SEPT9Q9UHD8 586 aaPredicted RBP14.36□□□□□ -0.11
LINC00643-202ENST00000553426 LOXHD1Q8IVV2 1947 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 C9IYK1 514 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 ZNF862O60290 1169 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 MGEA5O60502 916 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 PSMD10O75832 226 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 GATMP50440 423 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 UBE3AQ05086 875 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 HYAL1Q12794 435 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 ANKRD1Q15327 319 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 XKR3Q5GH77 459 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 TMEM31Q5JXX7 168 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 ABI1Q8IZP0 508 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 SPPL3Q8TCT6 385 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 POF1BQ8WVV4 589 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 NLRP7Q8WX94 980 aa14.35□□□□□ -0.11
LINC00643-202ENST00000553426 DDX25Q9UHL0 483 aaKnown RBP14.35□□□□□ -0.11
LINC00643-202ENST00000553426 EVPLQ92817 2033 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 MARCH6O60337 910 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 DKC1O60832 514 aaKnown RBP eCLIP14.34□□□□□ -0.11
LINC00643-202ENST00000553426 TDP2O95551 362 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 ALADP13716 330 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 NDUFV1P49821 464 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 ANAPC15P60006 121 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 FAM189BP81408 668 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 INF2Q27J81 1249 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 CTC1Q2NKJ3 1217 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 LETM2Q2VYF4 491 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 MTERF2Q49AM1 385 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 FAM102BQ5T8I3 360 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 THNSL1Q8IYQ7 743 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 WASF1Q92558 559 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 GJA10Q969M2 543 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 POP1Q99575 1024 aaKnown RBP14.34□□□□□ -0.11
LINC00643-202ENST00000553426 NAP1L4Q99733 375 aaKnown RBP14.34□□□□□ -0.11
LINC00643-202ENST00000553426 JPH2Q9BR39 696 aaPredicted RBP14.34□□□□□ -0.11
LINC00643-202ENST00000553426 NIFKQ9BYG3 293 aaKnown RBP14.34□□□□□ -0.11
LINC00643-202ENST00000553426 TMEM117Q9H0C3 514 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 ADAMTS10Q9H324 1103 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 DACT1Q9NYF0 836 aa14.34□□□□□ -0.11
LINC00643-202ENST00000553426 MYO7AQ13402 2215 aa14.33□□□□□ -0.12
LINC00643-202ENST00000553426 FSD2A1L4K1 749 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms