RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 LOC102724159A0A0B4J2E5 919 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 ADAM23O75077 832 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 ZBED4O75132 1171 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 MARCKSP29966 332 aaPredicted RBP9.49□□□□□ -0.89
VPS29-203ENST00000546588 COPB2P35606 906 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 PHKA2P46019 1235 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 GRIN1Q05586 938 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 SPIRE1Q08AE8 756 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 PABPC4Q13310 644 aaKnown RBP eCLIP9.49□□□□□ -0.896e-6■■■■■ 28.1
VPS29-203ENST00000546588 SNAPC2Q13487 334 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 TMEM132BQ14DG7 1078 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 PWP2Q15269 919 aaKnown RBP9.49□□□□□ -0.89
VPS29-203ENST00000546588 UBE2SQ16763 222 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 USH1GQ495M9 461 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 HYIQ5T013 277 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 TREML2Q5T2D2 321 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 C1orf53Q5VUE5 145 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 JAKMIP3Q5VZ66 844 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 CST9Q5W186 159 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 XRRA1Q6P2D8 792 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 USP17L6PQ6QN14 398 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 B3GNT9Q6UX72 402 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 CCDC73Q6ZRK6 1079 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 MOB2Q70IA6 237 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 RIOX2Q8IUF8 465 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 FSIP1Q8NA03 581 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 CHST13Q8NET6 341 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 HAS1Q92839 578 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 WNK4Q96J92 1243 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 CLIC6Q96NY7 704 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 SPOCK3Q9BQ16 436 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 GRIP2Q9C0E4 1043 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 CSRNP2Q9H175 543 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 GBA2Q9HCG7 927 aaPredicted RBP9.49□□□□□ -0.89
VPS29-203ENST00000546588 CCPG1Q9ULG6 757 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 MCM3APO60318 1980 aa9.49□□□□□ -0.89
VPS29-203ENST00000546588 MYH9P35579 1960 aaKnown RBP9.48□□□□□ -0.89
VPS29-203ENST00000546588 MYH11P35749 1972 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 SPDYE3A6NKU9 549 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 GCOM1H8Y6P7 765 aaPredicted RBP9.48□□□□□ -0.89
VPS29-203ENST00000546588 TRAF5O00463 557 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 NFIBO00712 420 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 EIF1AYO14602 144 aaKnown RBP9.48□□□□□ -0.89
VPS29-203ENST00000546588 MSTNO14793 375 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 SLC37A4O43826 429 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 CCNT1O60563 726 aaKnown RBP9.48□□□□□ -0.89
VPS29-203ENST00000546588 CNMDO75829 334 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 MICAL2O94851 1124 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 ZNF202O95125 648 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 CAVIN2O95810 425 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 PROCP04070 461 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 POLR2MP0CAP2 368 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 GNA15P30679 374 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 MCM7P33993 719 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 ZNF174Q15697 407 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 LETM2Q2VYF4 491 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 PCNX4Q63HM2 1172 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 FOXR1Q6PIV2 292 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 ANKRD23Q86SG2 305 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 SLFN12Q8IYM2 578 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 BEND7Q8N7W2 519 aaPredicted RBP9.48□□□□□ -0.89
VPS29-203ENST00000546588 RNF34Q969K3 372 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 CUEDC2Q9H467 287 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 EHMT1Q9H9B1 1298 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 MAGEF1Q9HAY2 307 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 FAM13BQ9NYF5 915 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 TUBE1Q9UJT0 475 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 KCNH3Q9ULD8 1083 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 MRVI1Q9Y6F6 885 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 ADGRA2Q96PE1 1338 aa9.48□□□□□ -0.89
VPS29-203ENST00000546588 SIP14410 1827 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 A0A1B0GVL5 298 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 SPATA31C2B4DYI2 1134 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 FAM86B1E9PN63 330 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 MEIS1O00470 390 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 KINO60870 393 aaKnown RBP9.47□□□□□ -0.89
VPS29-203ENST00000546588 STAM2O75886 525 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 TDP2O95551 362 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 MYL1P05976 194 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 FAM86B2P0C5J1 330 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 MUTP22033 750 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 ZNF76P36508 570 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 SYKP43405 635 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 GTF2A2P52657 109 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 SNAP25P60880 206 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 HERVK_113P62684 666 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 C4orf17Q53FE4 359 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 MUM1L1Q5H9M0 696 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 CCDC174Q6PII3 467 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 DTHD1Q6ZMT9 781 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 KRBA2Q6ZNG9 492 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 C2orf69Q8N8R5 385 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 SHCBP1Q8NEM2 672 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 PIK3R5Q8WYR1 880 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 GTPBP3Q969Y2 492 aaKnown RBP9.47□□□□□ -0.89
VPS29-203ENST00000546588 FAM20AQ96MK3 541 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 ASCC2Q9H1I8 757 aaPredicted RBP9.47□□□□□ -0.89
VPS29-203ENST00000546588 ACAD9Q9H845 621 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 DISC1Q9NRI5 854 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms