RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 PCDHA13Q9Y5I0 950 aa11.12□□□□□ -0.63
PCDH9-204ENST00000544246 COBLO75128 1261 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 KRT14P02533 472 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 HNRNPCP07910 306 aaKnown RBP eCLIP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 PTGDRQ13258 359 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 DMC1Q14565 340 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 Q3C1V9 767 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 RASSF3Q86WH2 238 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 PCDHA7Q9UN72 937 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 CCDC78A2IDD5 438 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 KRT38O76015 456 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 BRD1O95696 1058 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 MMEP08473 750 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 PSMA2P25787 234 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 CXCR5P32302 372 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 ELMOD1Q8N336 334 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 KDM4CQ9H3R0 1056 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 BABAM1Q9NWV8 329 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 NDUFB9Q9Y6M9 179 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 ACSL3O95573 720 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 TTC23LQ6PF05 361 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF790Q6PG37 636 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 DSTYKQ6XUX3 929 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 NHEJ1Q9H9Q4 299 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 GPBP1L1Q9HC44 474 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 POLR3AO14802 1390 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 E5RI56 91 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 HAUS5O94927 633 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 CD58P19256 250 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 GOLGA8DPQ0D2H9 430 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 E2F4Q16254 413 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 KLHL38Q2WGJ6 581 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF658Q5TYW1 1059 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 SH3KBP1Q96B97 665 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 AK8Q96MA6 479 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 AP1M1Q9BXS5 423 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 MAGEB5Q9BZ81 275 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 HPCAL4Q9UM19 191 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 CLIC4Q9Y696 253 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 TNKSO95271 1327 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 hCG_2014768A0A024R1R8 64 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 MEIS1O00470 390 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 NR1H3Q13133 447 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 NBPF20Q3BBV1 942 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 THOC1Q96FV9 657 aaKnown RBP11.11□□□□□ -0.63
PCDH9-204ENST00000544246 LCMT1Q9UIC8 334 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 PCDHA4Q9UN74 947 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 PLAAQ9Y263 795 aa11.11□□□□□ -0.63
PCDH9-204ENST00000544246 CCDC195A0A1B0GUA6 201 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 STK25O00506 426 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 CDO1Q16878 200 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 GCOM2Q9BZD3 368 aaPredicted RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 CLIC2O15247 247 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 HOXC9P31274 260 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ABCB5Q2M3G0 1257 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ZNF555Q8NEP9 628 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 KIF2CQ99661 725 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 OSBPL10Q9BXB5 764 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 MRPS26Q9BYN8 205 aaKnown RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 RPF1Q9H9Y2 349 aaKnown RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 KLHL8Q9P2G9 620 aaPredicted RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 LZTS1Q9Y250 596 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 SHROOM2Q13796 1616 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 IMPDH2P12268 514 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 IL10P22301 178 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 BTDP43251 543 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 LRRC8EQ6NSJ5 796 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 DPY19L2Q6NUT2 758 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 SCARA5Q6ZMJ2 495 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 G2E3Q7L622 706 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 EPM2AIP1Q7L775 607 aaPredicted RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 FLAD1Q8NFF5 587 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 EGFL8Q99944 293 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 FTOQ9C0B1 505 aaKnown RBP eCLIP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 RUBCNLQ9H714 662 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 SLC24A3Q9HC58 644 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ATP5JP18859 108 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 PLD3Q8IV08 490 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 THEM5Q8N1Q8 247 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 VPS11Q9H270 941 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 PCDHA1Q9Y5I3 950 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 S100A5P33763 92 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 MAPRE2Q15555 327 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 NBPF9Q3BBW0 867 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 RARS2Q5T160 578 aaKnown RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ARHGEF25Q86VW2 580 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ERICH1Q86X53 443 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 CATSPER1Q8NEC5 780 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 KCNV2Q8TDN2 545 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ZFP42Q96MM3 310 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 WDR11Q9BZH6 1224 aa11.1□□□□□ -0.63
PCDH9-204ENST00000544246 ADD3Q9UEY8 706 aaKnown RBP11.1□□□□□ -0.63
PCDH9-204ENST00000544246 PODXLO00592 558 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 PPP6R2O75170 966 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 HOXA7P31268 230 aaPredicted RBP11.09□□□□□ -0.63
PCDH9-204ENST00000544246 GOLGA8FQ08AF8 430 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 NR5A1Q13285 461 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 BTNL9Q6UXG8 535 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 CEP170P1Q96L14 293 aa11.09□□□□□ -0.63
PCDH9-204ENST00000544246 AMNQ9BXJ7 453 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms