RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 NOLC1Q14978 699 aaKnown RBP eCLIP13.82□□□□□ -0.2
SMAD3-204ENST00000540846 KRT31Q15323 416 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 FILIP1LQ4L180 1135 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 TCP11X2Q5H9J9 407 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 C17orf53Q8N3J3 647 aaPredicted RBP13.82□□□□□ -0.2
SMAD3-204ENST00000540846 SYT2Q8N9I0 419 aaPredicted RBP13.82□□□□□ -0.2
SMAD3-204ENST00000540846 HPS3Q969F9 1004 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 SPATA33Q96N06 139 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 DUSP9Q99956 384 aaKnown RBP13.82□□□□□ -0.2
SMAD3-204ENST00000540846 FAM184BQ9ULE4 1060 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 DNM3Q9UQ16 869 aa13.82□□□□□ -0.2
SMAD3-204ENST00000540846 MAFBQ9Y5Q3 323 aaPredicted RBP13.82□□□□□ -0.2
SMAD3-204ENST00000540846 ZBTB39O15060 712 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 OFD1O75665 1012 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 INHAP05111 366 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 SSBP05455 408 aaKnown RBP eCLIP13.81□□□□□ -0.2
SMAD3-204ENST00000540846 PSAPP07602 524 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 ATP4AP20648 1035 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 EEF1GP26641 437 aaKnown RBP13.81□□□□□ -0.2
SMAD3-204ENST00000540846 QARSP47897 775 aaKnown RBP13.81□□□□□ -0.2
SMAD3-204ENST00000540846 LBX1P52954 281 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 NKX3-2P78367 333 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 CENPPQ6IPU0 288 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 TLK2Q86UE8 772 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 CCDC65Q8IXS2 484 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 C4orf19Q8IY42 314 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 AFAP1L1Q8TED9 768 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 AFG1LQ8WV93 481 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 SEPT1Q8WYJ6 367 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 UPF3AQ9H1J1 476 aaKnown RBP13.81□□□□□ -0.2
SMAD3-204ENST00000540846 SLC39A2Q9NP94 309 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 PANK4Q9NVE7 773 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 Q9Y3F1 56 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 SAMM50Q9Y512 469 aa13.81□□□□□ -0.2
SMAD3-204ENST00000540846 ITIH6Q6UXX5 1313 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 A6NJR5 290 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 DUSP11O75319 330 aaKnown RBP13.8□□□□□ -0.2
SMAD3-204ENST00000540846 EYA4O95677 639 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 MMP3P08254 477 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 SKILP12757 684 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 KCNJ6P48051 423 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 COPB1P53618 953 aaKnown RBP13.8□□□□□ -0.2
SMAD3-204ENST00000540846 PSMC5P62195 406 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 ARSHQ5FYA8 562 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 FAM26FQ5R3K3 315 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 SWSAP1Q6NVH7 229 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 MIS18BP1Q6P0N0 1132 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
SMAD3-204ENST00000540846 TRIM50Q86XT4 487 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 TPH2Q8IWU9 490 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 OR6J1Q8NGC5 347 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 ZSWIM4Q9H7M6 989 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 GABBR1Q9UBS5 961 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 SCN10AQ9Y5Y9 1956 aa13.8□□□□□ -0.2
SMAD3-204ENST00000540846 TEX33O43247 280 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
SMAD3-204ENST00000540846 ANKRD40Q6AI12 368 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 FAM114A1Q8IWE2 563 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 CSGALNACT2Q8N6G5 542 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 CCDC112Q8NEF3 446 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 PIGOQ8TEQ8 1089 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 SH3TC2Q8TF17 1288 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 C16orf70Q9BSU1 422 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 SEMA6BQ9H3T3 888 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 PCDHA2Q9Y5H9 948 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 TMEM150BA6NC51 233 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 NOP56O00567 594 aaKnown RBP13.79□□□□□ -0.2
SMAD3-204ENST00000540846 DYNC1LI2O43237 492 aaPredicted RBP13.79□□□□□ -0.2
SMAD3-204ENST00000540846 NRDCO43847 1150 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 ADAMTS4O75173 837 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 LGALS2P05162 132 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 GJA9P57773 515 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 PRKCEQ02156 737 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 LRRC63Q05C16 580 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 PTPN21Q16825 1174 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 ANO5Q75V66 913 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 CTU1Q7Z7A3 348 aaKnown RBP13.79□□□□□ -0.2
SMAD3-204ENST00000540846 ATP6V0A1Q93050 837 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 SRRTQ9BXP5 876 aaKnown RBP13.79□□□□□ -0.2
SMAD3-204ENST00000540846 ZNF302Q9NR11 478 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 KCND1Q9NSA2 647 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 TAB2Q9NYJ8 693 aa13.79□□□□□ -0.2
SMAD3-204ENST00000540846 NPHP3-ACAD11A0A0J9YXS1 232 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 LGALS16A8MUM7 142 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 N4BP3O15049 544 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 PPFIA4O75335 1185 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 KRT18P05783 430 aaKnown RBP13.78□□□□□ -0.2
SMAD3-204ENST00000540846 GIT2Q14161 759 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 ZCWPW2Q504Y3 356 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 PLPPR4Q7Z2D5 763 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 MYOCDQ8IZQ8 938 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 GLIS3Q8NEA6 775 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 NACC1Q96RE7 527 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 CEP89Q96ST8 783 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 REEP2Q9BRK0 252 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 BHMT2Q9H2M3 363 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 TMX1Q9H3N1 280 aa13.78□□□□□ -0.2
SMAD3-204ENST00000540846 MAGEC2Q9UBF1 373 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms