RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 FBXO22Q8NEZ5 403 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 GDPD5Q8WTR4 605 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 TMEM40Q8WWA1 233 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 ATXN2LQ8WWM7 1075 aaKnown RBP12.99□□□□□ -0.33
RTN3-209ENST00000538995 PPM1EQ8WY54 764 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 HAS1Q92839 578 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 ZNF689Q96CS4 500 aaPredicted RBP12.99□□□□□ -0.33
RTN3-209ENST00000538995 JPH2Q9BR39 696 aaPredicted RBP12.99□□□□□ -0.33
RTN3-209ENST00000538995 TMX1Q9H3N1 280 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 C1orf112Q9NSG2 853 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 SEPT9Q9UHD8 586 aaPredicted RBP12.99□□□□□ -0.33
RTN3-209ENST00000538995 MTUS1Q9ULD2 1270 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 AKT3Q9Y243 479 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 GINS2Q9Y248 185 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 SPTBN5Q9NRC6 3674 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 IGKV6-21A0A0C4DH24 114 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 FAM205CA6NFA0 338 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 BTBD18B2RXH4 712 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 RBAK-RBAKDNI3L0D1 243 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 EML1O00423 815 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 DLL1O00548 723 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 MARCH6O60337 910 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 DTNBO60941 627 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 DGKIO75912 1065 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 STBD1O95210 358 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 BAG4O95429 457 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 VTNP04004 478 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 P4HBP07237 508 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 QARSP47897 775 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 CCDC85BQ15834 202 aaPredicted RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 TMEM266Q2M3C6 531 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 EPC2Q52LR7 807 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 RTN4RL1Q86UN2 441 aaPredicted RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 EXOC8Q8IYI6 725 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 MICALL1Q8N3F8 863 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 LRRC71Q8N4P6 559 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 FIBCD1Q8N539 461 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 CLP1Q92989 425 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 CEP89Q96ST8 783 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 OSMRQ99650 979 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 C17orf80Q9BSJ5 609 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 ADAMTS10Q9H324 1103 aa12.98□□□□□ -0.33
RTN3-209ENST00000538995 UPF2Q9HAU5 1272 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 NOC2LQ9Y3T9 749 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 COL4A4P53420 1690 aaPredicted RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 MYH9P35579 1960 aaKnown RBP12.98□□□□□ -0.33
RTN3-209ENST00000538995 PRRC2BQ5JSZ5 2229 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 TTC3P53804 2025 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 DENND3A2RUS2 1198 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 C5orf67F2Z3F1 127 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 NEMFO60524 1076 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 RB1P06400 928 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 EIF4BP23588 611 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 SARSP49591 514 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 DNM2P50570 870 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 GPC3P51654 580 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 NLRP11P59045 1033 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 SPIRE1Q08AE8 756 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 NFX1Q12986 1120 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 ORC2Q13416 577 aaPredicted RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 EPHA7Q15375 998 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 PTPROQ16827 1216 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 MTERF2Q49AM1 385 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 TJAP1Q5JTD0 557 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 ANO5Q75V66 913 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 FAM228AQ86W67 206 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 C4orf19Q8IY42 314 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 TMEM192Q8IY95 271 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 CMTR2Q8IYT2 770 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 BANK1Q8NDB2 785 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 SYMPKQ92797 1274 aaKnown RBP12.97□□□□□ -0.33
RTN3-209ENST00000538995 C8orf76Q96K31 380 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 CDHR5Q9HBB8 845 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 RGS18Q9NS28 235 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 ST3GAL5Q9UNP4 418 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 COG5Q9UP83 839 aa12.97□□□□□ -0.33
RTN3-209ENST00000538995 DDX11L8A8MPP1 907 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 H3BNC9 293 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 ST18O60284 1047 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 MAFO75444 373 aaPredicted RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 LINC00271P0C7V0 271 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 DARSP14868 501 aaKnown RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 MRPS5P82675 430 aaKnown RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 BTG3Q14201 252 aaPredicted RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 CALCRLQ16602 461 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 AAK1Q2M2I8 961 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 TIGD5Q53EQ6 642 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 SLC24A5Q71RS6 500 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 NEK9Q8TD19 979 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 MRPL38Q96DV4 380 aaKnown RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 PPP1R16BQ96T49 567 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 ADAM2Q99965 735 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 LXNQ9BS40 222 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 C11orf84Q9BUA3 381 aaPredicted RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 PLVAPQ9BX97 442 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 COL25A1Q9BXS0 654 aaPredicted RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 FOXP1Q9H334 677 aaPredicted RBP12.96□□□□□ -0.33
RTN3-209ENST00000538995 ZSWIM4Q9H7M6 989 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 PRDM6Q9NQX0 595 aa12.96□□□□□ -0.33
RTN3-209ENST00000538995 CYP26B1Q9NR63 512 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms