RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 LOC730098B7Z3J9 87 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 DGKIO75912 1065 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 GHRP10912 638 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 NDUFV1P49821 464 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 MRPS9P82933 396 aaKnown RBP9.27□□□□□ -0.92
NEDD8-207ENST00000533242 ZXDAP98168 799 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 FAM160A1Q05DH4 1040 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 COASYQ13057 564 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 SEMA3FQ13275 785 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 LPIN1Q14693 890 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 CBX2Q14781 532 aaPredicted RBP9.27□□□□□ -0.92
NEDD8-207ENST00000533242 SEC23AQ15436 765 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 UTP14CQ5TAP6 766 aaKnown RBP9.27□□□□□ -0.92
NEDD8-207ENST00000533242 CYFIP1Q7L576 1253 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 CCDC186Q7Z3E2 898 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 RSPH3Q86UC2 560 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 MICU3Q86XE3 530 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 CMTR2Q8IYT2 770 aaKnown RBP9.27□□□□□ -0.92
NEDD8-207ENST00000533242 IGDCC4Q8TDY8 1250 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 PBXIP1Q96AQ6 731 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 PHOX2BQ99453 314 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 RIOX1Q9H6W3 641 aa9.27□□□□□ -0.92
NEDD8-207ENST00000533242 TERF1P54274 439 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 GRM4Q14833 912 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 ARID5BQ14865 1188 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 NTRK3Q16288 839 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 RUFY4Q6ZNE9 571 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 TRIM50Q86XT4 487 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 SUGP1Q8IWZ8 645 aaKnown RBP9.27□□□□□ -0.93
NEDD8-207ENST00000533242 DHX40Q8IX18 779 aaKnown RBP9.27□□□□□ -0.93
NEDD8-207ENST00000533242 ZNF396Q96N95 335 aaPredicted RBP9.27□□□□□ -0.93
NEDD8-207ENST00000533242 SENP7Q9BQF6 1050 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 TRIM5Q9C035 493 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 LY9Q9HBG7 655 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 KIF3AQ9Y496 699 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 MYO7AQ13402 2215 aa9.27□□□□□ -0.93
NEDD8-207ENST00000533242 CPLX1O14810 134 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 RPLP2P05387 115 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 CAMK1Q14012 370 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 SLC35G1Q2M3R5 365 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 FBXO47Q5MNV8 452 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 AXDND1Q5T1B0 1012 aaPredicted RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 XRRA1Q6P2D8 792 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 CCDC73Q6ZRK6 1079 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 TSHZ1Q6ZSZ6 1077 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 FBXL6Q8N531 539 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 GIMAP8Q8ND71 665 aaPredicted RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 SPPL3Q8TCT6 385 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 PIGSQ96S52 555 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 ALG13Q9NP73 1137 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 CLEC1BQ9P126 229 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 MRPL42Q9Y6G3 142 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 XIRP2A4UGR9 3374 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 PNMA6FA0A0J9YX94 578 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 KINO60870 393 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 TCF15Q12870 199 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 DNTTIP2Q5QJE6 756 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 IER5LQ5T953 404 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 ADALQ6DHV7 355 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 ADGRD2Q7Z7M1 963 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 HOMER1Q86YM7 354 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 NPAS4Q8IUM7 802 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 SMRP1Q8NCR6 262 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 IRF2BPLQ9H1B7 796 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 SQORQ9Y6N5 450 aa9.26□□□□□ -0.93
NEDD8-207ENST00000533242 FNDC1Q4ZHG4 1894 aaPredicted RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 BAZ2BQ9UIF8 2168 aaKnown RBP9.26□□□□□ -0.93
NEDD8-207ENST00000533242 PLXNA3P51805 1871 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 MBLAC1A4D2B0 266 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 ITGB1P05556 798 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 DNAJB1P25685 340 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 MARCKSP29966 332 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 METAP2P50579 478 aaKnown RBP eCLIP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 MRPS6P82932 125 aaKnown RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 PPFIA1Q13136 1202 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 STK38Q15208 465 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 PCNX4Q63HM2 1172 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 NLRX1Q86UT6 975 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 CACTINQ8WUQ7 758 aaKnown RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 LINC01599Q8WXQ3 324 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 MRPS27Q92552 414 aaKnown RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 CDY2AQ9Y6F7 541 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 SPTLC2O15270 562 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 STAG3L1P0CL83 205 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 ATF7P17544 494 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 SIGLEC14Q08ET2 396 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 TRDNQ13061 729 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 HSP90AA2PQ14568 343 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 GRIK4Q16099 956 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 STX1AQ16623 288 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 DPCR1Q3MIW9 517 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 ATL3Q6DD88 541 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 CMTR1Q8N1G2 835 aaKnown RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 CRIPAKQ8N1N5 446 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 PHF7Q9BWX1 381 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 FTHL17Q9BXU8 183 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 FAM13BQ9NYF5 915 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 TUBE1Q9UJT0 475 aa9.25□□□□□ -0.93
NEDD8-207ENST00000533242 USP15Q9Y4E8 981 aaPredicted RBP9.25□□□□□ -0.93
NEDD8-207ENST00000533242 TELO2Q9Y4R8 837 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms