RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 BANK1Q8NDB2 785 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 SCLT1Q96NL6 688 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 ASB2Q96Q27 587 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 TMX1Q9H3N1 280 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 CDHR5Q9HBB8 845 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 VAV3Q9UKW4 847 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 LRFN2Q9ULH4 789 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 LIMCH1Q9UPQ0 1083 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 NOC2LQ9Y3T9 749 aaKnown RBP14.97□□□□□ -0.01
VPS28-211ENST00000530790 REV3LO60673 3130 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 CUL9Q8IWT3 2517 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 MYH9P35579 1960 aaKnown RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 FAM205CA6NFA0 338 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 GPR32O75388 356 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 DGKIO75912 1065 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 IBSPP21815 317 aaPredicted RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 PSMC5P62195 406 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 ST3GAL1Q11201 340 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 PTPROQ16827 1216 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 AAK1Q2M2I8 961 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 EARS2Q5JPH6 523 aaKnown RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 FAM228AQ86W67 206 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 POTEDQ86YR6 584 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 DIS3L2Q8IYB7 885 aaKnown RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 LINC01465Q8N7H1 131 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 TNFRSF25Q93038 417 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 ZNF689Q96CS4 500 aaPredicted RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 MRPL38Q96DV4 380 aaKnown RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 C1orf112Q9NSG2 853 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 RNF216Q9NWF9 866 aaPredicted RBP14.96□□□□□ -0.01
VPS28-211ENST00000530790 COG5Q9UP83 839 aa14.96□□□□□ -0.01
VPS28-211ENST00000530790 RALGAPA2Q2PPJ7 1873 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 H3BNC9 293 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 DKC1O60832 514 aaKnown RBP eCLIP14.95□□□□□ -0.02
VPS28-211ENST00000530790 BAG4O95429 457 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 SARSP49591 514 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 NLRP11P59045 1033 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 GPM6BQ13491 265 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 TARBP2Q15633 366 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 TIGD5Q53EQ6 642 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 RTN4RL1Q86UN2 441 aaPredicted RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 CCDC83Q8IWF9 413 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 SLFN12Q8IYM2 578 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 CMTR2Q8IYT2 770 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 HLA-CQ95604 372 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 ADAM2Q99965 735 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 C11orf84Q9BUA3 381 aaPredicted RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 NIFKQ9BYG3 293 aaKnown RBP14.95□□□□□ -0.02
VPS28-211ENST00000530790 ST3GAL5Q9UNP4 418 aa14.95□□□□□ -0.02
VPS28-211ENST00000530790 PRRC2BQ5JSZ5 2229 aaKnown RBP14.94□□□□□ -0.02
VPS28-211ENST00000530790 XIRP2A4UGR9 3374 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 TMEM150BA6NC51 233 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 DDX11L8A8MPP1 907 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 C5orf67F2Z3F1 127 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 EML1O00423 815 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 MGEA5O60502 916 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 QARSP47897 775 aaKnown RBP14.94□□□□□ -0.02
VPS28-211ENST00000530790 TFF2Q03403 129 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 SAFBQ15424 915 aaKnown RBP eCLIP14.94□□□□□ -0.02
VPS28-211ENST00000530790 NCAPH2Q6IBW4 605 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 CRIPAKQ8N1N5 446 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 NLRP7Q8WX94 980 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 HAS1Q92839 578 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 CLP1Q92989 425 aaKnown RBP14.94□□□□□ -0.02
VPS28-211ENST00000530790 ADAMTS10Q9H324 1103 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 RGS18Q9NS28 235 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 NLRC5Q86WI3 1866 aa14.94□□□□□ -0.02
VPS28-211ENST00000530790 BTBD18B2RXH4 712 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 RB1P06400 928 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 P4HBP07237 508 aaKnown RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 LINC00271P0C7V0 271 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 EIF4BP23588 611 aaKnown RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 BMPR1AP36894 532 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 DNM2P50570 870 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 GPC3P51654 580 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 PAN2Q504Q3 1202 aaKnown RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 PLA2G4FQ68DD2 849 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 SLC24A5Q71RS6 500 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 ADAMTS19Q8TE59 1207 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 ZNF668Q96K58 619 aaPredicted RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 JPH2Q9BR39 696 aaPredicted RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 SH2D3AQ9BRG2 576 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 LLPHQ9BRT6 129 aaKnown RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 LXNQ9BS40 222 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 SH2B1Q9NRF2 756 aaPredicted RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 PCDHB7Q9Y5E2 793 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 MRPL42Q9Y6G3 142 aaKnown RBP14.93□□□□□ -0.02
VPS28-211ENST00000530790 TTC3P53804 2025 aa14.93□□□□□ -0.02
VPS28-211ENST00000530790 WDR81Q562E7 1941 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 LOXHD1Q8IVV2 1947 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 NEMFO60524 1076 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 STBD1O95210 358 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 DARSP14868 501 aaKnown RBP14.92□□□□□ -0.02
VPS28-211ENST00000530790 HMGN5P82970 282 aaKnown RBP14.92□□□□□ -0.02
VPS28-211ENST00000530790 CDC42EP1Q00587 391 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 CALCRLQ16602 461 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 ANO5Q75V66 913 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 SLC7A3Q8WY07 619 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 C8orf76Q96K31 380 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 ZSCAN31Q96LW9 406 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms