RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 EPOPA6NHQ4 379 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 MPHOSPH10O00566 681 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 FIBPO43427 364 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 FGBP02675 491 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SCG2P13521 617 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 PDCP20941 246 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 CDK7P50613 346 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 QRICH1Q2TAL8 776 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 GNPTABQ3T906 1256 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 BRDTQ58F21 947 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 ODR4Q5SWX8 454 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 CWF19L1Q69YN2 538 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 PLPPR4Q7Z2D5 763 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SH3RF1Q7Z6J0 888 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SMAP1Q8IYB5 467 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 ELOA2Q8IYF1 753 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 CCDC155Q8N6L0 562 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SYTL5Q8TDW5 730 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 FAM20AQ96MK3 541 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 KIF2CQ99661 725 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 PHF20Q9BVI0 1012 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 GTPBP4Q9BZE4 634 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 TXNRD2Q9NNW7 524 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 JADE2Q9NQC1 790 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TBC1D22BQ9NU19 505 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TBX21Q9UL17 535 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 NDUFB9Q9Y6M9 179 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 KDM3AQ9Y4C1 1321 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 CYP2D7A0A087X1C5 515 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 H0Y626 953 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 WIPF1O43516 503 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 ADAMTS4O75173 837 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TRIM16O95361 564 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 PAX3P23760 479 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 ADORA2AP29274 412 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SFNP31947 248 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 CPT1AP50416 773 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 METAP2P50579 478 aaKnown RBP eCLIP3.23□□□□□ -1.89
MCF2-208ENST00000519895 MCCD1P59942 119 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 ENPEPQ07075 957 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 HSP90AA2PQ14568 343 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 STXBP2Q15833 593 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TSHZ3Q63HK5 1081 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 KRT40Q6A162 431 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 SNRNP48Q6IEG0 339 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 ZNF746Q6NUN9 644 aaPredicted RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 TAPT1Q6NXT6 567 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 C19orf48Q6RUI8 117 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 RNF207Q6ZRF8 634 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 ZNF662Q6ZS27 426 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 NME8Q8N427 588 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 PPTC7Q8NI37 304 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TMEM174Q8WUU8 243 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 TNFRSF25Q93038 417 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 MRPL38Q96DV4 380 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 A1CFQ9NQ94 594 aaKnown RBP3.23□□□□□ -1.89
MCF2-208ENST00000519895 PXMP2Q9NR77 195 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 STK17AQ9UEE5 414 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 STK39Q9UEW8 545 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 CCPG1Q9ULG6 757 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 PCDHA4Q9UN74 947 aa3.23□□□□□ -1.89
MCF2-208ENST00000519895 RRN3P2A6NIE6 340 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 GOLGA8AA7E2F4 631 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 GOLGA8BA8MQT2 603 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 KBTBD13C9JR72 458 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 COBLO75128 1261 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SNAI1O95863 264 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 GH1P01241 217 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 U2AF2P26368 475 aaKnown RBP eCLIP3.22□□□□□ -1.89
MCF2-208ENST00000519895 MAGEA9P43362 315 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ERVK-21P61565 698 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ATP2B2Q01814 1243 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SSRP1Q08945 709 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 TTLL4Q14679 1199 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 Q3C1V9 767 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PHLDB3Q6NSJ2 640 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CNNM4Q6P4Q7 775 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 BRAPQ7Z569 592 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 GPR65Q8IYL9 337 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SPIRE2Q8WWL2 714 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 FAM167AQ96KS9 214 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PSMG3-AS1Q96PY0 264 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 UCN2Q96RP3 112 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PYM1Q9BRP8 204 aaKnown RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 FAM126AQ9BYI3 521 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 PRORYQ9H606 182 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SPC25Q9HBM1 224 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 BRMS1Q9HCU9 246 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 A0A0U1RQG5 324 aaPredicted RBP3.22□□□□□ -1.89
MCF2-208ENST00000519895 MEIS1O00470 390 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 MEIS2O14770 477 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 OPLAHO14841 1288 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 CYTH3O43739 400 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 PPFIA4O75335 1185 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 RETP07949 1114 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 SUPT20HL2P0C7V6 817 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 ADCY7P51828 1080 aa3.22□□□□□ -1.89
MCF2-208ENST00000519895 JAK3P52333 1124 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms