RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ZBTB33Q86T24 672 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 TAB3Q8N5C8 712 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 SPATA4Q8NEY3 305 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 GCNT4Q9P109 453 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 MYO3BQ8WXR4 1341 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 ATF7P17544 494 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 KLRK1P26718 216 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 RCSD1Q6JBY9 416 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 PRPF38AQ8NAV1 312 aaKnown RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 FGD4Q96M96 766 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 NT5C1BQ96P26 610 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 THAP9Q9H5L6 903 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 EIF4E1BA6NMX2 242 aaKnown RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 IFRD2Q12894 506 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 CUL3Q13618 768 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 BARGINQ6ZT62 677 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 KAZALD1Q96I82 304 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 BARHL2Q9NY43 387 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 GFPT2O94808 682 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 TDP2O95551 362 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 PDHBP11177 359 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 SEC24CP53992 1094 aa14.16□□□□□ -0.14
TCOF1-213ENST00000514442 UHMK1Q8TAS1 419 aaKnown RBP14.16□□□□□ -0.14
TCOF1-213ENST00000514442 LMNAP02545 664 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 CCND1P24385 295 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 EIF4A3P38919 411 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 KIF11P52732 1056 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 AP3B2Q13367 1082 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 NEDD1Q8NHV4 660 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 PCDHB4Q9Y5E5 795 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 TXNDC9O14530 226 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ZNF185O15231 689 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 FTCDO95954 541 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 STAT3P40763 770 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 TTBK2Q6IQ55 1244 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 PDXDC2PQ6P474 469 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 C3orf20Q8ND61 904 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ZIM3Q96PE6 472 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 CENPKQ9BS16 269 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 NACA2Q9H009 215 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 SPATA31A6Q5VVP1 1343 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 MAP2P11137 1827 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 PGRMC1O00264 195 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 TROVE2P10155 538 aaKnown RBP eCLIP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 SPP2Q13103 211 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 MESDQ14696 234 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 LLGL1Q15334 1064 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 BSPRYQ5W0U4 402 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 PBKQ96KB5 322 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 FLT1P17948 1338 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 POTEB3A0JP26 581 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 POTECB2RU33 542 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 STAM2O75886 525 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 NSFP46459 744 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 MFAP3P55082 362 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ANTXR2P58335 489 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 CCDC14Q49A88 953 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 INTS5Q6P9B9 1019 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 POTEBQ6S5H4 581 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 CCDC89Q8N998 374 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ABTB1Q969K4 478 aaPredicted RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 BEGAINQ9BUH8 593 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 SCAF8Q9UPN6 1271 aaKnown RBP14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ITIH6Q6UXX5 1313 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 PXDNQ92626 1479 aa14.15□□□□□ -0.14
TCOF1-213ENST00000514442 ARHGAP4P98171 946 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 FMR1Q06787 632 aaKnown RBP eCLIP14.14□□□□□ -0.157e-7■■■■□ 19.9
TCOF1-213ENST00000514442 TFDP1Q14186 410 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 NFRKBQ6P4R8 1299 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 HACE1Q8IYU2 909 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 KIRREL3Q8IZU9 778 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 MYCBPAPQ8TBZ2 947 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 IGDCC4Q8TDY8 1250 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 RMDN3Q96TC7 470 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 NDST4Q9H3R1 872 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 MAP3K7O43318 606 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 RCAN1P53805 252 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 LRIG3Q6UXM1 1119 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 RAB3IL1Q8TBN0 382 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 RAB20Q9NX57 234 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 ESYT3A0FGR9 886 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 SPOUT1Q5T280 376 aaKnown RBP14.14□□□□□ -0.15
TCOF1-213ENST00000514442 SNRNP48Q6IEG0 339 aaKnown RBP14.14□□□□□ -0.15
TCOF1-213ENST00000514442 CDHR1Q96JP9 859 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 VWDEQ8N2E2 1590 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 PSAPP07602 524 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 PEX3P56589 373 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 ANKRD20A3Q5VUR7 823 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 KAZNQ674X7 775 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 CASC4Q6P4E1 433 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 TMED8Q6PL24 325 aaPredicted RBP14.14□□□□□ -0.15
TCOF1-213ENST00000514442 NEK9Q8TD19 979 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 CRAMP1Q96RY5 1269 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 MTA3Q9BTC8 594 aa14.14□□□□□ -0.15
TCOF1-213ENST00000514442 SYNJ2BP-COX16A0A087WUM0 186 aa14.13□□□□□ -0.15
TCOF1-213ENST00000514442 PTK2Q05397 1052 aa14.13□□□□□ -0.15
TCOF1-213ENST00000514442 MTMR1Q13613 665 aa14.13□□□□□ -0.15
TCOF1-213ENST00000514442 ARHGAP18Q8N392 663 aa14.13□□□□□ -0.15
TCOF1-213ENST00000514442 ZNF579Q8NAF0 562 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms