RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 P4HBP07237 508 aaKnown RBP22.56■■□□□ 1.2
USP53-208ENST00000514305 STAT5BP51692 787 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 GPNMBQ14956 572 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 ZNF618Q5T7W0 954 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 UTP14CQ5TAP6 766 aaKnown RBP22.56■■□□□ 1.2
USP53-208ENST00000514305 KRT79Q5XKE5 535 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 B3GNT9Q6UX72 402 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 PLPPR4Q7Z2D5 763 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 KRI1Q8N9T8 703 aaKnown RBP22.56■■□□□ 1.2
USP53-208ENST00000514305 SPATA32Q96LK8 384 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 CERS4Q9HA82 394 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 ZNF302Q9NR11 478 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 EMSYQ7Z589 1322 aa22.56■■□□□ 1.2
USP53-208ENST00000514305 KAT6AQ92794 2004 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 VWA3AA6NCI4 1184 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 SLC26A4O43511 780 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 LGR5O75473 907 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 CCNE2O96020 404 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 MUTP22033 750 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 TXLNAP40222 546 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 IKBKEQ14164 716 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 PTPAQ15257 358 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 TRIM71Q2Q1W2 868 aaKnown RBP22.55■■□□□ 1.2
USP53-208ENST00000514305 SERINC5Q86VE9 423 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 BCAS3Q9H6U6 928 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 RCOR1Q9UKL0 485 aa22.55■■□□□ 1.2
USP53-208ENST00000514305 THPOP40225 353 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 PSMC5P62195 406 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 MRPS5P82675 430 aaKnown RBP22.54■■□□□ 1.2
USP53-208ENST00000514305 TAP1Q03518 808 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 SWSAP1Q6NVH7 229 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 PDXDC2PQ6P474 469 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 CKAP2LQ8IYA6 745 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 KCTD17Q8N5Z5 321 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 IGSF22Q8N9C0 903 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 ARNTL2Q8WYA1 636 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 WNT8BQ93098 351 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 GJA10Q969M2 543 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 FAM167AQ96KS9 214 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 NRBP2Q9NSY0 501 aa22.54■■□□□ 1.2
USP53-208ENST00000514305 TRANK1O15050 2925 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 IGKV6D-21A0A0A0MT36 114 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 SMIM10L2AP0DMW4 78 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 SMIM10L2BP0DMW5 78 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 GNAT1P11488 350 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 MARCKSP29966 332 aaPredicted RBP22.53■■□□□ 1.2
USP53-208ENST00000514305 UBA7P41226 1012 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 QARSP47897 775 aaKnown RBP22.53■■□□□ 1.2
USP53-208ENST00000514305 ME1P48163 572 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 DEFB103AP81534 67 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 HIC1Q14526 733 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 ASB2Q96Q27 587 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 ZSWIM4Q9H7M6 989 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 TUFT1Q9NNX1 390 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 GABBR1Q9UBS5 961 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 MICAL3Q7RTP6 2002 aa22.53■■□□□ 1.2
USP53-208ENST00000514305 SPTBN5Q9NRC6 3674 aaKnown RBP22.53■■□□□ 1.2
USP53-208ENST00000514305 RSPH10B2B2RC85 870 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 CUTAO60888 179 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 RSPH10BP0C881 870 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 SPIRE1Q08AE8 756 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 SKIV2LQ15477 1246 aaKnown RBP22.52■■□□□ 1.2
USP53-208ENST00000514305 TRAF7Q6Q0C0 670 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 OTUD6AQ7L8S5 288 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 CDK5RAP3Q96JB5 506 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 EIF2AK1Q9BQI3 630 aaKnown RBP22.52■■□□□ 1.2
USP53-208ENST00000514305 POLR3CQ9BUI4 534 aaPredicted RBP22.52■■□□□ 1.2
USP53-208ENST00000514305 MAFBQ9Y5Q3 323 aaPredicted RBP22.52■■□□□ 1.2
USP53-208ENST00000514305 KDM3AQ9Y4C1 1321 aa22.52■■□□□ 1.2
USP53-208ENST00000514305 COL4A4P53420 1690 aaPredicted RBP22.52■■□□□ 1.2
USP53-208ENST00000514305 POTEMA6NI47 508 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 RFXAPO00287 272 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 RPA1P27694 616 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 HOXC8P31273 242 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 CALML4Q96GE6 196 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 NT5C3AQ9H0P0 336 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 RNPEPQ9H4A4 650 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 CCDC39Q9UFE4 941 aa22.51■■□□□ 1.19
USP53-208ENST00000514305 GOLGA6L4A6NEF3 574 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 EML1O00423 815 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 TREHO43280 583 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 HBP1O60381 514 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 CAND2O75155 1236 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 GJB5O95377 273 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 POU3F3P20264 500 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 CCT6AP40227 531 aaKnown RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 MBTPS1Q14703 1052 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 TMCO2Q7Z6W1 182 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 CCDC60Q8IWA6 550 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 C4orf19Q8IY42 314 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 EXOC8Q8IYI6 725 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 RASSF8Q8NHQ8 419 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 SNX29Q8TEQ0 813 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 LEO1Q8WVC0 666 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 BBXQ8WY36 941 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 RAD9AQ99638 391 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 FBXO2Q9UK22 296 aaPredicted RBP22.5■■□□□ 1.19
USP53-208ENST00000514305 MTCH2Q9Y6C9 303 aa22.5■■□□□ 1.19
USP53-208ENST00000514305 PRRC2BQ5JSZ5 2229 aaKnown RBP22.49■■□□□ 1.19
USP53-208ENST00000514305 EPOPA6NHQ4 379 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms