RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 COL9A3Q14050 684 aaPredicted RBP23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 ODR4Q5SWX8 454 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 CES5AQ6NT32 575 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 CASC1Q6TDU7 716 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 CASP10Q92851 521 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 TMEM117Q9H0C3 514 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 ADAM7Q9H2U9 754 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 RNF19AQ9NV58 838 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 HCFC2Q9Y5Z7 792 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 IGKV6D-21A0A0A0MT36 114 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 CCDC69A6NI79 296 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 VTNP04004 478 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 CHMLP26374 656 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 SLC26A2P50443 739 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 CRYBB1P53674 252 aaPredicted RBP23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 DSC3Q14574 896 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 TPRNQ4KMQ1 711 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 KANK3Q6NY19 840 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 TRMT1LQ7Z2T5 733 aaKnown RBP23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 FRMD5Q7Z6J6 570 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 RUFY2Q8WXA3 655 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 ZNF558Q96NG5 402 aa23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 ELAC1Q9H777 363 aaKnown RBP23.16■■□□□ 1.3
SQSTM1-215ENST00000514093 ZBTB42B2RXF5 422 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 CA8P35219 290 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 KRT17Q04695 432 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 CEP55Q53EZ4 464 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 TTC22Q5TAA0 569 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 ABHD15Q6UXT9 468 aa23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 CCDC60Q8IWA6 550 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 C12orf76Q8N812 135 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-215ENST00000514093 C2orf71A6NGG8 1288 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 SH2B2O14492 632 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 GPR32O75388 356 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 ATP4AP20648 1035 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 ZNF484Q5JVG2 852 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 FAM160B1Q5W0V3 765 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 ASTLQ6HA08 431 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 SWSAP1Q6NVH7 229 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 PDXDC2PQ6P474 469 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 METTL13Q8N6R0 699 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 MRPL43Q8N983 215 aaKnown RBP23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 RNF169Q8NCN4 708 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 ZNF302Q9NR11 478 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 SPG21Q9NZD8 308 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 LIMD1Q9UGP4 676 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 EVPLQ92817 2033 aa23.14■■□□□ 1.29
SQSTM1-215ENST00000514093 RIF1Q5UIP0 2472 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 MEIS1O00470 390 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 CLASP2O75122 1294 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 ITIH3Q06033 890 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 AAMPQ13685 434 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 SMC1AQ14683 1233 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 RARS2Q5T160 578 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 WWC2Q6AWC2 1192 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 TYW1BQ6NUM6 668 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 FAM43BQ6ZT52 329 aaPredicted RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 ABI1Q8IZP0 508 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 NECTIN4Q96NY8 510 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 ANO3Q9BYT9 981 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 MFSD1Q9H3U5 465 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 RBM8AQ9Y5S9 174 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 COL1A2P08123 1366 aa23.13■■□□□ 1.29
SQSTM1-215ENST00000514093 VPS13AQ96RL7 3174 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 C22orf31O95567 290 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 PPM1AP35813 382 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 TMTC3Q6ZXV5 915 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 CKAP2LQ8IYA6 745 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 LRRC43Q8N309 656 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 TMTC2Q8N394 836 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 MAP4K1Q92918 833 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 LRRC2Q9BYS8 371 aa23.12■■□□□ 1.29
SQSTM1-215ENST00000514093 NT5C1B-RDH14C9J2C7 533 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 SGSM2O43147 1006 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 ZNF76P36508 570 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 FANCBQ8NB91 859 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 FEZF2Q8TBJ5 459 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 NKD2Q969F2 451 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 ZNF668Q96K58 619 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 SLC12A7Q9Y666 1083 aa23.11■■□□□ 1.29
SQSTM1-215ENST00000514093 HOXA2O43364 376 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CXCL14O95715 111 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CALM1P0DP23 149 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CALM2P0DP24 149 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CALM3P0DP25 149 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 MCM5P33992 734 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 MTHFRP42898 656 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 METAP2P50579 478 aaKnown RBP eCLIP23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CLCN3P51790 818 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 NAPAP54920 295 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 CLLU1OSQ5K130 101 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 MIS18BP1Q6P0N0 1132 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 ECHDC2Q86YB7 292 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 ADSSL1Q8N142 457 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 SLC39A11Q8N1S5 342 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 TDRD5Q8NAT2 981 aaKnown RBP23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 FLCNQ8NFG4 579 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 EXOC6Q8TAG9 804 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 RIC8AQ9NPQ8 531 aa23.1■■□□□ 1.29
SQSTM1-215ENST00000514093 DHX15O43143 795 aaKnown RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms