RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DNAAF5Q86Y56 855 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 KBTBD2Q8IY47 623 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 ST13P4Q8IZP2 240 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 STMN2Q93045 179 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 TRIM11Q96F44 468 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 ZNF184Q99676 751 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 RASGRF2O14827 1237 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 KRT38O76015 456 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 ASMTLO95671 621 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 ZFYP08048 801 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 MARK3P27448 753 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 COPB2P35606 906 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 CDK7P50613 346 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 COG7P83436 770 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SLC34A1Q06495 639 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SATL1Q86VE3 508 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 TRIM22Q8IYM9 498 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 ADSSL1Q8N142 457 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 EIF1ADQ8N9N8 165 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 TEKT1Q969V4 418 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 OLFM3Q96PB7 478 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PACSIN1Q9BY11 444 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PITPNM3Q9BZ71 974 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SEMA4AQ9H3S1 761 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 NOC2LQ9Y3T9 749 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PJA2O43164 708 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 BCRP11274 1271 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PLCG2P16885 1265 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 HOXD11P31277 338 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 GSTM4Q03013 218 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 NME8Q8N427 588 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SCFD2Q8WU76 684 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PRPF31Q8WWY3 499 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 PABPC3Q9H361 631 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 SNX24Q9Y343 169 aa12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 EDC4Q6P2E9 1401 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-213ENST00000511496 hCG_1642624A0A1W2PR95 340 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 PGRMC1O00264 195 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 IFIT1P09914 478 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 TROVE2P10155 538 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 XBP1P17861 261 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 FGFR4P22455 802 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 YY1P25490 414 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 KCTD21Q4G0X4 260 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 TMEM67Q5HYA8 995 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 CCDC65Q8IXS2 484 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 CLIP3Q96DZ5 547 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 TMEM59LQ9UK28 342 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SLC12A7Q9Y666 1083 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 FRMPD1Q5SYB0 1578 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 WNT7AO00755 349 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SH3BGRP55822 239 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 CYLC2Q14093 348 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 GIT2Q14161 759 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 THOC7Q6I9Y2 204 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 CCDC25Q86WR0 208 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SLC7A6OSQ96CW6 309 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 FOXP1Q9H334 677 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 PRKAG3Q9UGI9 489 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SEC63Q9UGP8 760 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 STK36Q9NRP7 1315 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SPTLC1O15269 473 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 ATP5HO75947 161 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 CD97P48960 835 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 HDAC4P56524 1084 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SULT2A1Q06520 285 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SMUG1Q53HV7 270 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 ISLR2Q6UXK2 745 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 MPHOSPH6Q99547 160 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 TUT1Q9H6E5 874 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 FAM217BQ9NTX9 383 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 UTP6Q9NYH9 597 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 TSC22D4Q9Y3Q8 395 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 SLC4A4Q9Y6R1 1079 aa12.97□□□□□ -0.33
LIMCH1-213ENST00000511496 FAM170AA1A519 330 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 PDE5AO76074 875 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 PSMD7P51665 324 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 ACSBG2Q5FVE4 666 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 EARS2Q5JPH6 523 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 ZNF362Q5T0B9 420 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 IZUMO2Q6UXV1 221 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 TREML1Q86YW5 311 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 DEPTORQ8TB45 409 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 WASF1Q92558 559 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 NUDT16Q96DE0 195 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 SMC6Q96SB8 1091 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 GPCPD1Q9NPB8 672 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 WASF2Q9Y6W5 498 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 EIF4A1P60842 406 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 PPP2R5CQ13362 524 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 LONRF1Q17RB8 773 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 CGB2Q6NT52 195 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 C4orf50Q6ZRC1 276 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 COL23A1Q86Y22 540 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 CYTH2Q99418 400 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 TANGO6Q9C0B7 1094 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 NT5C3AQ9H0P0 336 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 EPB41L4BQ9H329 900 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 CHKBQ9Y259 395 aa12.96□□□□□ -0.33
LIMCH1-213ENST00000511496 PTPRUQ92729 1446 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms