RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CACNB2Q08289 660 aaPredicted RBP5.79□□□□□ -1.48
NUP54-206ENST00000508465 TWISTNBQ3B726 338 aaPredicted RBP5.79□□□□□ -1.48
NUP54-206ENST00000508465 PARP10Q53GL7 1025 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 SLC10A5Q5PT55 438 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 RPGRQ92834 1020 aaKnown RBP5.79□□□□□ -1.48
NUP54-206ENST00000508465 ZBTB8AQ96BR9 441 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 MYD88Q99836 296 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 ISCA1Q9BUE6 129 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 NMRK2Q9NPI5 230 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 ZNF277Q9NRM2 450 aaPredicted RBP5.79□□□□□ -1.48
NUP54-206ENST00000508465 CHD4Q14839 1912 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 IL16Q14005 1332 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 FANCIQ9NVI1 1328 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 PI4KAP2A4QPH2 592 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 PLATP00750 562 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 CD247P20963 164 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 ALDH1B1P30837 517 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 C1QTNF8P60827 252 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 RBM10P98175 930 aaKnown RBP5.78□□□□□ -1.48
NUP54-206ENST00000508465 TCEAL1Q15170 157 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 HSP90AB3PQ58FF7 597 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 TDRD10Q5VZ19 366 aaKnown RBP5.78□□□□□ -1.48
NUP54-206ENST00000508465 DCAF15Q66K64 600 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 FAM124AQ86V42 546 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 LZTR1Q8N653 840 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 PI4KAP1Q8N8J0 262 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 NETO2Q8NC67 525 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 ADAMTS17Q8TE56 1095 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 RBM17Q96I25 401 aaKnown RBP5.78□□□□□ -1.48
NUP54-206ENST00000508465 C8orf49Q96NF6 230 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 STK31Q9BXU1 1019 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 PCDH18Q9HCL0 1135 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 SPATA6Q9NWH7 488 aaPredicted RBP5.78□□□□□ -1.48
NUP54-206ENST00000508465 DIS3Q9Y2L1 958 aaKnown RBP5.78□□□□□ -1.48
NUP54-206ENST00000508465 MAP3K2Q9Y2U5 619 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 SLX4Q8IY92 1834 aa5.78□□□□□ -1.48
NUP54-206ENST00000508465 ANKRD31Q8N7Z5 1873 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 NRXN2Q9P2S2 1712 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 NUP98P52948 1817 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 ACRP10323 421 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 ZNF20P17024 532 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 TAGLNQ01995 201 aaKnown RBP5.77□□□□□ -1.49
NUP54-206ENST00000508465 CRY2Q49AN0 593 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 AXDND1Q5T1B0 1012 aaPredicted RBP5.77□□□□□ -1.49
NUP54-206ENST00000508465 EEF1DP3Q658K8 133 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 KSR2Q6VAB6 950 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 LGI4Q8N135 537 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 RNF34Q969K3 372 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 NOX5Q96PH1 765 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 SORCS2Q96PQ0 1159 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 TM9SF2Q99805 663 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 BCL11AQ9H165 835 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 NOL6Q9H6R4 1146 aaKnown RBP5.77□□□□□ -1.49
NUP54-206ENST00000508465 BCAS3Q9H6U6 928 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 RXFP1Q9HBX9 757 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 SCN7AQ01118 1682 aa5.77□□□□□ -1.49
NUP54-206ENST00000508465 SH3TC1Q8TE82 1336 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 DDNO94850 711 aaPredicted RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 DDX58O95786 925 aaKnown RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 TP53P04637 393 aaPredicted RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 IGKV5-2P06315 115 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 IFNGR1P15260 489 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 ERCC3P19447 782 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 GDF5P43026 501 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 HMGA2P52926 109 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 TBC1D10BQ4KMP7 808 aaPredicted RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 CCDC93Q567U6 631 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 RCSD1Q6JBY9 416 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 BORAQ6PGQ7 559 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 DDX46Q7L014 1031 aaKnown RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 RTKN2Q8IZC4 609 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 TAB3Q8N5C8 712 aaPredicted RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 USP33Q8TEY7 942 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 ZDHHC15Q96MV8 337 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 CRAMP1Q96RY5 1269 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 TAOK3Q9H2K8 898 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 MYH16Q9H6N6 1097 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 CWC25Q9NXE8 425 aaPredicted RBP5.76□□□□□ -1.49
NUP54-206ENST00000508465 ADCY9O60503 1353 aa5.76□□□□□ -1.49
NUP54-206ENST00000508465 ZNF536O15090 1300 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 ABCC4O15439 1325 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 LAMB4A4D0S4 1761 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 BCORQ6W2J9 1755 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 BRCA1P38398 1863 aaKnown RBP5.75□□□□□ -1.49
NUP54-206ENST00000508465 COL11A2P13942 1736 aaPredicted RBP5.75□□□□□ -1.49
NUP54-206ENST00000508465 GLTPD2A6NH11 291 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 CCER2I3L3R5 266 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 BBOX1O75936 387 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 CYP2C8P10632 490 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 SLFN5Q08AF3 891 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 SOGA3Q5TF21 947 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 GLB1LQ6UWU2 654 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 KIAA0825Q8IV33 1275 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 LINC00482Q8N8I6 264 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 ZBTB38Q8NAP3 1195 aaPredicted RBP5.75□□□□□ -1.49
NUP54-206ENST00000508465 CCDC191Q8NCU4 936 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 CELF1Q92879 486 aaKnown RBP5.75□□□□□ -1.49
NUP54-206ENST00000508465 DVL3Q92997 716 aaPredicted RBP5.75□□□□□ -1.49
NUP54-206ENST00000508465 CHMP4AQ9BY43 222 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 ZNRF3Q9ULT6 936 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms