RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 REXO1Q8N1G1 1221 aaKnown RBP9.09□□□□□ -0.95
SCN1A-207ENST00000507401 KRI1Q8N9T8 703 aaKnown RBP9.09□□□□□ -0.95
SCN1A-207ENST00000507401 CCDC148Q8NFR7 591 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 LMBR1Q8WVP7 490 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 SEPT8Q92599 483 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 PDLIM2Q96JY6 352 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 RAD9AQ99638 391 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 PANK2Q9BZ23 570 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 AZI2Q9H6S1 392 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 TBC1D22BQ9NU19 505 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 TMEM260Q9NX78 707 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 CCDC39Q9UFE4 941 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 TELO2Q9Y4R8 837 aa9.09□□□□□ -0.95
SCN1A-207ENST00000507401 TRANK1O15050 2925 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 DHX15O43143 795 aaKnown RBP9.08□□□□□ -0.96
SCN1A-207ENST00000507401 GJB5O95377 273 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 CIITAP33076 1130 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 STAT5BP51692 787 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 USP11P51784 963 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 ANAPC15P60006 121 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 ACTR2P61160 394 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 NUCB2P80303 420 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 SP4Q02446 784 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 PPFIA1Q13136 1202 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 ITGB3BPQ13352 177 aaPredicted RBP9.08□□□□□ -0.96
SCN1A-207ENST00000507401 ADGRE1Q14246 886 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 GRIK4Q16099 956 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 MARCH8Q5T0T0 291 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 JAKMIP3Q5VZ66 844 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 Q6ZNB5 142 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 ZNF598Q86UK7 904 aaKnown RBP9.08□□□□□ -0.96
SCN1A-207ENST00000507401 TRIM50Q86XT4 487 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 TRIM22Q8IYM9 498 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 DBF4BQ8NFT6 615 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 APBB2Q92870 758 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 PHKBQ93100 1093 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 PCYT2Q99447 389 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 PKD2L1Q9P0L9 805 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 INSL6Q9Y581 213 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 SQORQ9Y6N5 450 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 UNC80Q8N2C7 3258 aa9.08□□□□□ -0.96
SCN1A-207ENST00000507401 IGLV3-22A0A075B6J6 115 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 FAM86B1E9PN63 330 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 IPO5O00410 1097 aaKnown RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 AMHP03971 560 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 FAM86B2P0C5J1 330 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 INSRRP14616 1297 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 SSTR3P32745 418 aaPredicted RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 CCT2P78371 535 aaKnown RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 SETQ01105 290 aaPredicted RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 TAP1Q03518 808 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 SSRP1Q08945 709 aaKnown RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 TCTN1Q2MV58 587 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 IER5Q5VY09 327 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 GALNT17Q6IS24 598 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 CPLX2Q6PUV4 134 aaKnown RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 ABHD15Q6UXT9 468 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 PLA2G4DQ86XP0 818 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 CREBRFQ8IUR6 639 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 NME8Q8N427 588 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 USP38Q8NB14 1042 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 SYMPKQ92797 1274 aaKnown RBP9.07□□□□□ -0.96
SCN1A-207ENST00000507401 TOP1MTQ969P6 601 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 PGBD1Q96JS3 809 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 SLC26A6Q9BXS9 759 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 PDRG1Q9NUG6 133 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 LMCD1Q9NZU5 365 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 TUBE1Q9UJT0 475 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 PCDHA2Q9Y5H9 948 aa9.07□□□□□ -0.96
SCN1A-207ENST00000507401 CHD7Q9P2D1 2997 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 CPLX1O14810 134 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 DEXIO95424 95 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 CCNE2O96020 404 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 CHRNA1P02708 482 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 IGFBP4P22692 258 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 GTF2F1P35269 517 aaKnown RBP eCLIP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 MMP16P51512 607 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 ERVK-21P61565 698 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 DEFB103AP81534 67 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 HTRA4P83105 476 aaPredicted RBP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 GUCA2AQ02747 115 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 PLCB4Q15147 1175 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 FAM160B1Q5W0V3 765 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 ZNF746Q6NUN9 644 aaPredicted RBP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 ATXN2LQ8WWM7 1075 aaKnown RBP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 IL17RAQ96F46 866 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 ZNF577Q9BSK1 485 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 NCOA5Q9HCD5 579 aaKnown RBP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 ZKSCAN5Q9Y2L8 839 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 FCF1Q9Y324 198 aaKnown RBP9.06□□□□□ -0.96
SCN1A-207ENST00000507401 CUL9Q8IWT3 2517 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 EYSQ5T1H1 3165 aa9.06□□□□□ -0.96
SCN1A-207ENST00000507401 PTPRSQ13332 1948 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRUNE2Q8WUY3 3088 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 COL1A2P08123 1366 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 SMIM35A0A1B0GVV1 85 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 TRIM66O15016 1216 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 ADAMTS3O15072 1205 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 HBP1O60381 514 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms