RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MAFBQ9Y5Q3 323 aaPredicted RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 SCN10AQ9Y5Y9 1956 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 TRIOO75962 3097 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 PP2D1A8MPX8 630 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 HAS3O00219 553 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 CSF2RAP15509 400 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 CCT6AP40227 531 aaKnown RBP11.22□□□□□ -0.61
NUP54-203ENST00000504173 PRKCEQ02156 737 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 GRIN1Q05586 938 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 CTTNQ14247 550 aaKnown RBP11.22□□□□□ -0.61
NUP54-203ENST00000504173 PLCB4Q15147 1175 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 NBPF20Q3BBV1 942 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 FAM47CQ5HY64 1035 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 HFE2Q6ZVN8 426 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 TRMT1LQ7Z2T5 733 aaKnown RBP11.22□□□□□ -0.61
NUP54-203ENST00000504173 TPH2Q8IWU9 490 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 TMEM199Q8N511 208 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 C7orf31Q8N865 590 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 PPP1R13LQ8WUF5 828 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 FAM167AQ96KS9 214 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 CLIC6Q96NY7 704 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 PRRX2Q99811 253 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 POLR3CQ9BUI4 534 aaPredicted RBP11.22□□□□□ -0.61
NUP54-203ENST00000504173 CSRNP2Q9H175 543 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 ZSWIM4Q9H7M6 989 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 TUFT1Q9NNX1 390 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 RCOR1Q9UKL0 485 aa11.22□□□□□ -0.61
NUP54-203ENST00000504173 MYH9P35579 1960 aaKnown RBP11.21□□□□□ -0.61
NUP54-203ENST00000504173 GRIN2DO15399 1336 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 ARVCFO00192 962 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 ZNF862O60290 1169 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 HBP1O60381 514 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 CUTAO60888 179 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 MED24O75448 989 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 SLITRK3O94933 977 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 OATP04181 439 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 SMIM10L2AP0DMW4 78 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 SMIM10L2BP0DMW5 78 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 RPA1P27694 616 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 CDC25AP30304 524 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 TXLNAP40222 546 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 UBA7P41226 1012 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 PPFIA1Q13136 1202 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 ZRSR1Q15695 479 aaKnown RBP11.21□□□□□ -0.61
NUP54-203ENST00000504173 SPECC1Q5M775 1068 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 NFRKBQ6P4R8 1299 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 CABP7Q86V35 215 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 CATSPER3Q86XQ3 398 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 RASSF8Q8NHQ8 419 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 ATP8B4Q8TF62 1192 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 BBXQ8WY36 941 aaPredicted RBP11.21□□□□□ -0.61
NUP54-203ENST00000504173 CDK5RAP3Q96JB5 506 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 HSD17B14Q9BPX1 270 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 SEZ6LQ9BYH1 1024 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 RNPEPQ9H4A4 650 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 GDPD2Q9HCC8 539 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 NRBP2Q9NSY0 501 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 HDAC6Q9UBN7 1215 aa11.21□□□□□ -0.61
NUP54-203ENST00000504173 SEPT9Q9UHD8 586 aaPredicted RBP11.21□□□□□ -0.61
NUP54-203ENST00000504173 TCHHQ07283 1943 aa11.21□□□□□ -0.62
NUP54-203ENST00000504173 WDR81Q562E7 1941 aa11.21□□□□□ -0.62
NUP54-203ENST00000504173 GBF1Q92538 1859 aa11.21□□□□□ -0.62
NUP54-203ENST00000504173 KDM3AQ9Y4C1 1321 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 C17orf102A2RUQ5 167 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 DDX11L8A8MPP1 907 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 SPATA31C1P0DKV0 1188 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 ACRP10323 421 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 ATP4AP20648 1035 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 MUTP22033 750 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 KCNA4P22459 653 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 PTPN11Q06124 597 aaPredicted RBP11.2□□□□□ -0.62
NUP54-203ENST00000504173 GRIK4Q16099 956 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 XKR3Q5GH77 459 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 POTEGQ6S5H5 508 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 SESTD1Q86VW0 696 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 C4orf19Q8IY42 314 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 ZNF579Q8NAF0 562 aaKnown RBP11.2□□□□□ -0.62
NUP54-203ENST00000504173 SLC43A3Q8NBI5 491 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 CALML4Q96GE6 196 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 EPSTI1Q96J88 318 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 MMTAG2Q9BU76 263 aaKnown RBP11.2□□□□□ -0.62
NUP54-203ENST00000504173 IL23AQ9NPF7 189 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 WRAP73Q9P2S5 460 aaPredicted RBP11.2□□□□□ -0.62
NUP54-203ENST00000504173 GTF2IRD1Q9UHL9 959 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 PCDHA7Q9UN72 937 aa11.2□□□□□ -0.62
NUP54-203ENST00000504173 RIF1Q5UIP0 2472 aaKnown RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 MROH7Q68CQ1 1323 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 NRCAMQ92823 1304 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 SLC26A4O43511 780 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 KRT37O76014 449 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 LYPLA2O95372 231 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 GNAT1P11488 350 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 INSRRP14616 1297 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 YWHABP31946 246 aaKnown RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 SSTR3P32745 418 aaPredicted RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 IGBP1P78318 339 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 LEXMQ3ZCV2 418 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 MTERF2Q49AM1 385 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 ZNF484Q5JVG2 852 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms