RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 CXCL9Q07325 125 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 FAM209AQ5JX71 171 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 SLC10A5Q5PT55 438 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 MBLAC2Q68D91 279 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 DENND5AQ6IQ26 1287 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 GALNT18Q6P9A2 607 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 USP53Q70EK8 1073 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 PPP1R42Q7Z4L9 355 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 PPIL6Q8IXY8 311 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 ADARB2Q9NS39 739 aaKnown RBP8.28□□□□□ -1.08
VIM-207ENST00000495528 GPRC5DQ9NZD1 345 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 ATP6V0A2Q9Y487 856 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 LTBP1Q14766 1721 aa8.28□□□□□ -1.08
VIM-207ENST00000495528 MEFVO15553 781 aaPredicted RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 ANP32CO43423 234 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 ANXA1P04083 346 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 SCG5P05408 212 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 FGFR1P11362 822 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 EIF2S2P20042 333 aaKnown RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 GMPSP49915 693 aaPredicted RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 INF2Q27J81 1249 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 CCDC103Q8IW40 242 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 KREMEN2Q8NCW0 462 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 OSBP2Q969R2 916 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 IPO9Q96P70 1041 aaKnown RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 UTP14AQ9BVJ6 771 aaKnown RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 TMX4Q9H1E5 349 aaPredicted RBP8.27□□□□□ -1.09
VIM-207ENST00000495528 VPS33BQ9H267 617 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 GULP1Q9UBP9 304 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 RIC1Q4ADV7 1423 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 ABCC4O15439 1325 aa8.27□□□□□ -1.09
VIM-207ENST00000495528 TRBV23OR9-2A0A075B6M9 112 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 ARNTLO00327 626 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 CELF2O95319 508 aaKnown RBP8.26□□□□□ -1.09
VIM-207ENST00000495528 GLI1P08151 1106 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 MSL3P1P0C860 447 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 JUNBP17275 347 aaPredicted RBP8.26□□□□□ -1.09
VIM-207ENST00000495528 SDHBP21912 280 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 TACR1P25103 407 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 MAP2K2P36507 400 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 MAP4K2Q12851 820 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 PROSER3Q2NL68 480 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 PARP10Q53GL7 1025 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 SAPCD2Q86UD0 394 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 NLRX1Q86UT6 975 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 SP8Q8IXZ3 490 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 DIO2Q92813 273 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 SHISA4Q96DD7 197 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 C1orf159Q96HA4 380 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 RTFDC1Q9BY42 306 aaPredicted RBP8.26□□□□□ -1.09
VIM-207ENST00000495528 GLIS2Q9BZE0 524 aaPredicted RBP8.26□□□□□ -1.09
VIM-207ENST00000495528 KANSL2Q9H9L4 492 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 PGAP2Q9UHJ9 254 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 TSPYL4Q9UJ04 414 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 RWDD3Q9Y3V2 267 aa8.26□□□□□ -1.09
VIM-207ENST00000495528 TRBV23-1A0A0A0MS06 115 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 SHTN1A0MZ66 631 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 C7orf72A4D263 438 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 BBOX1O75936 387 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 RAD17O75943 681 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 LCP1P13796 627 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 CYP4F8P98187 520 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 MVKQ03426 396 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 SLC35F1Q5T1Q4 408 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 MCTP1Q6DN14 999 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 CIAPIN1Q6FI81 312 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 MPZL3Q6UWV2 235 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 DLK2Q6UY11 383 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 DPP8Q6V1X1 898 aaPredicted RBP8.25□□□□□ -1.09
VIM-207ENST00000495528 COPS6Q7L5N1 327 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 SUPT20HQ8NEM7 779 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 THAP3Q8WTV1 239 aaPredicted RBP8.25□□□□□ -1.09
VIM-207ENST00000495528 LIN37Q96GY3 246 aaPredicted RBP8.25□□□□□ -1.09
VIM-207ENST00000495528 EXOC2Q96KP1 924 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 MMP19Q99542 508 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 PTCH2Q9Y6C5 1203 aa8.25□□□□□ -1.09
VIM-207ENST00000495528 A0A1W2PQJ5 194 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 YDJCA8MPS7 323 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.24□□□□□ -1.09
VIM-207ENST00000495528 NPHS1O60500 1241 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 RGS19P49795 217 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 RIPK4P57078 832 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 KIAA2012Q0VF49 1180 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 AIMP1Q12904 312 aaKnown RBP8.24□□□□□ -1.09
VIM-207ENST00000495528 SNX17Q15036 470 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 C2orf27AQ580R0 203 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 NLRP10Q86W26 655 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 SCUBE1Q8IWY4 988 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 SH3TC2Q8TF17 1288 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 ASIC4Q96FT7 647 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 KRTAP9-2Q9BYQ4 174 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 CNOT7Q9UIV1 285 aaKnown RBP8.24□□□□□ -1.09
VIM-207ENST00000495528 YBX2Q9Y2T7 364 aaKnown RBP8.24□□□□□ -1.09
VIM-207ENST00000495528 NUP98P52948 1817 aa8.24□□□□□ -1.09
VIM-207ENST00000495528 ZNF503-AS2A6NEH8 195 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 TCIRG1Q13488 830 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 TNIP1Q15025 636 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 NTRK3Q16288 839 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 ADGRF1Q5T601 910 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 E4F1Q66K89 784 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms