RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 YEATS4O95619 227 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 CHRNA1P02708 482 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 SPATA31C1P0DKV0 1188 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 ACRP10323 421 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 RARRES1P49788 294 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 CLCN3P51790 818 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 CRYBB1P53674 252 aaPredicted RBP16.32■□□□□ 0.2
LIMS3-205ENST00000487150 EPHB4P54760 987 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 EMC2Q15006 297 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 PLEKHG4Q58EX7 1191 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 FBXO47Q5MNV8 452 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 PLA2G4FQ68DD2 849 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 ZNF410Q86VK4 478 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 LINC01465Q8N7H1 131 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 SPRYD3Q8NCJ5 442 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 SLC9A7Q96T83 725 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 MTRQ99707 1265 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 FTHL17Q9BXU8 183 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
LIMS3-205ENST00000487150 CFAP45Q9UL16 551 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 DNM3Q9UQ16 869 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 SLC4A7Q9Y6M7 1214 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 ASAP2O43150 1006 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 MED24O75448 989 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 GHRP10912 638 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 UBA7P41226 1012 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
LIMS3-205ENST00000487150 SMAD3P84022 425 aaKnown RBP16.31■□□□□ 0.2
LIMS3-205ENST00000487150 PAK2Q13177 524 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 MXD4Q14582 209 aaPredicted RBP16.31■□□□□ 0.2
LIMS3-205ENST00000487150 C9orf50Q5SZB4 431 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 RASIP1Q5U651 963 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 POTEGQ6S5H5 508 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 OTOP2Q7RTS6 562 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 LRRC71Q8N4P6 559 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 RASSF8Q8NHQ8 419 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 PHOSPHO2Q8TCD6 241 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 KCNG4Q8TDN1 519 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 CALML4Q96GE6 196 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 CEP89Q96ST8 783 aa16.31■□□□□ 0.2
LIMS3-205ENST00000487150 INO80BQ9C086 356 aaPredicted RBP16.31■□□□□ 0.2
LIMS3-205ENST00000487150 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-205ENST00000487150 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-205ENST00000487150 GPR182O15218 404 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 NPEPPSP55786 919 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 NUCB2P80303 420 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 TFDP1Q14186 410 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 MBTPS1Q14703 1052 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 SLC39A14Q15043 492 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 STK38Q15208 465 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 HYIQ5T013 277 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 C16orf59Q7L2K0 433 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 KRI1Q8N9T8 703 aaKnown RBP16.3■□□□□ 0.2
LIMS3-205ENST00000487150 NLRP7Q8WX94 980 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 SUCLA2Q9P2R7 463 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-205ENST00000487150 GINS2Q9Y248 185 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 SRPRBQ9Y5M8 271 aaKnown RBP16.3■□□□□ 0.2
LIMS3-205ENST00000487150 CLIC4Q9Y696 253 aa16.3■□□□□ 0.2
LIMS3-205ENST00000487150 RANBP2P49792 3224 aaKnown RBP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 TMEM150BA6NC51 233 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 RPS6KA5O75582 802 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 BRD1O95696 1058 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 AMHP03971 560 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 VTNP04004 478 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 ATP2A2P16615 1042 aaKnown RBP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 SFPQP23246 707 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 GPC3P51654 580 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 NLRP11P59045 1033 aaKnown RBP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 LPIN1Q14693 890 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 PTPAQ15257 358 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 PCBP1Q15365 356 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 RAB30Q15771 203 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 KIZQ2M2Z5 673 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 GPR153Q6NV75 609 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 CABP7Q86V35 215 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 DBF4BQ8NFT6 615 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 PIGOQ8TEQ8 1089 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 ZBTB10Q96DT7 871 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 USP28Q96RU2 1077 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 TIPINQ9BVW5 301 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 GCOM2Q9BZD3 368 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 DDX19AQ9NUU7 478 aaKnown RBP16.29■□□□□ 0.2
LIMS3-205ENST00000487150 KIAA1024Q9UPX6 916 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 COL4A3BPQ9Y5P4 624 aa16.29■□□□□ 0.2
LIMS3-205ENST00000487150 USO1O60763 962 aaKnown RBP16.28■□□□□ 0.2
LIMS3-205ENST00000487150 PPP6R2O75170 966 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 GPR32O75388 356 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 EYA4O95677 639 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 EIF4BP23588 611 aaKnown RBP16.28■□□□□ 0.2
LIMS3-205ENST00000487150 TMEM62Q0P6H9 643 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 GPNMBQ14956 572 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 IL17AQ16552 155 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 LINC00301Q8NCQ3 95 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 KCND2Q9NZV8 630 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 CCDC39Q9UFE4 941 aa16.28■□□□□ 0.2
LIMS3-205ENST00000487150 TMEM265A0A087WTH1 108 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 SPTLC2O15270 562 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 DARSP14868 501 aaKnown RBP16.27■□□□□ 0.2
LIMS3-205ENST00000487150 PHKA2P46019 1235 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 WDR5P61964 334 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms