RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 TRIM67Q6ZTA4 783 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 KRT25Q7Z3Z0 450 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 SUGP1Q8IWZ8 645 aaKnown RBP11.31□□□□□ -0.6
CPSF4-213ENST00000484112 EFHBQ8N7U6 833 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 NECAB1Q8N987 351 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 PRSS33Q8NF86 280 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 TRAPPC12Q8WVT3 735 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 MSLNLQ96KJ4 702 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 RPGRIP1Q96KN7 1286 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 FTHL17Q9BXU8 183 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 AZI2Q9H6S1 392 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 KCNH7Q9NS40 1196 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 TMEM260Q9NX78 707 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 PADI3Q9ULW8 664 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 GINS2Q9Y248 185 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 KIF3AQ9Y496 699 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 TRPV2Q9Y5S1 764 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 KAT6AQ92794 2004 aa11.31□□□□□ -0.6
CPSF4-213ENST00000484112 EYA4O95677 639 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 FDPSP14324 419 aaKnown RBP11.3□□□□□ -0.6
CPSF4-213ENST00000484112 ZXDAP98168 799 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 COASYQ13057 564 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 TMEM266Q2M3C6 531 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 TNPO1Q92973 898 aaKnown RBP11.3□□□□□ -0.6
CPSF4-213ENST00000484112 PCYT2Q99447 389 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 SDF4Q9BRK5 362 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 CELF4Q9BZC1 486 aaKnown RBP11.3□□□□□ -0.6
CPSF4-213ENST00000484112 TLE6Q9H808 572 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 JPH1Q9HDC5 661 aaPredicted RBP11.3□□□□□ -0.6
CPSF4-213ENST00000484112 TBC1D22BQ9NU19 505 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 USP15Q9Y4E8 981 aaPredicted RBP11.3□□□□□ -0.6
CPSF4-213ENST00000484112 PCDHB7Q9Y5E2 793 aa11.3□□□□□ -0.6
CPSF4-213ENST00000484112 ATG2AQ2TAZ0 1938 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 IGLV3-22A0A075B6J6 115 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 CYP3A7-CYP3A51PA0A087WV96 503 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 CCDC194A0A1B0GVG4 234 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 LOC730098B7Z3J9 87 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 GLP2RO95838 553 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 CYP3A7P24462 503 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 PTPN5P54829 565 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 RBM10P98175 930 aaKnown RBP11.29□□□□□ -0.6
CPSF4-213ENST00000484112 PLCB4Q15147 1175 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 NONOQ15233 471 aaKnown RBP eCLIP11.29□□□□□ -0.6
CPSF4-213ENST00000484112 NPY5RQ15761 445 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 BMP8AQ7Z5Y6 402 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 SMRP1Q8NCR6 262 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 AGO4Q9HCK5 861 aaKnown RBP11.29□□□□□ -0.6
CPSF4-213ENST00000484112 SLC9A2Q9UBY0 812 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 PCDHB12Q9Y5F1 795 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 PCDHA2Q9Y5H9 948 aa11.29□□□□□ -0.6
CPSF4-213ENST00000484112 TTC3P53804 2025 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 TBKBP1A7MCY6 615 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 FAM86B1E9PN63 330 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 RPLP2P05387 115 aaKnown RBP11.28□□□□□ -0.6
CPSF4-213ENST00000484112 FAM86B2P0C5J1 330 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 GCFC2P16383 781 aaKnown RBP11.28□□□□□ -0.6
CPSF4-213ENST00000484112 KRT2P35908 639 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 SLC26A2P50443 739 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 STAT5BP51692 787 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 KRT76Q01546 638 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 ST3GAL1Q11201 340 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 SAFBQ15424 915 aaKnown RBP eCLIP11.28□□□□□ -0.6
CPSF4-213ENST00000484112 Q4G0T1 1027 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 PPP4R3AQ6IN85 833 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 PLA2G4DQ86XP0 818 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 CCDC83Q8IWF9 413 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 THNSL1Q8IYQ7 743 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 CRIPAKQ8N1N5 446 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 TBCKQ8TEA7 893 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 PGBD1Q96JS3 809 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 AIFM3Q96NN9 605 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 PHF7Q9BWX1 381 aaPredicted RBP11.28□□□□□ -0.6
CPSF4-213ENST00000484112 TMX1Q9H3N1 280 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 AAASQ9NRG9 546 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 TCEAL9Q9UHQ7 104 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 SQORQ9Y6N5 450 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 IGSF9BQ9UPX0 1349 aa11.28□□□□□ -0.6
CPSF4-213ENST00000484112 DENND3A2RUS2 1198 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 DDX39AO00148 427 aaKnown RBP11.27□□□□□ -0.61
CPSF4-213ENST00000484112 IPO5O00410 1097 aaKnown RBP11.27□□□□□ -0.61
CPSF4-213ENST00000484112 RPS6KA5O75582 802 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 SP100P23497 879 aaPredicted RBP11.27□□□□□ -0.61
CPSF4-213ENST00000484112 KLRC1P26715 233 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 SARSP49591 514 aaKnown RBP11.27□□□□□ -0.61
CPSF4-213ENST00000484112 ERVFC1P60507 584 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 ACTR2P61160 394 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 TCF15Q12870 199 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 FAM102BQ5T8I3 360 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 MTHFD1LQ6UB35 978 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 ZBTB33Q86T24 672 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 SMAP1Q8IYB5 467 aaPredicted RBP11.27□□□□□ -0.61
CPSF4-213ENST00000484112 NME8Q8N427 588 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 FBXL6Q8N531 539 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 FAM184AQ8NB25 1140 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 CYP2W1Q8TAV3 490 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 MBOAT7Q96N66 472 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 PPP1R16BQ96T49 567 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 RIT2Q99578 217 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 PRRX2Q99811 253 aa11.27□□□□□ -0.61
CPSF4-213ENST00000484112 ZNF577Q9BSK1 485 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms