RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 XPO6Q96QU8 1125 aaKnown RBP13.78□□□□□ -0.2
VPS52-218ENST00000482399 NSRP1Q9H0G5 558 aaKnown RBP13.78□□□□□ -0.2
VPS52-218ENST00000482399 ACTR5Q9H9F9 607 aaPredicted RBP13.78□□□□□ -0.2
VPS52-218ENST00000482399 USP40Q9NVE5 1235 aa13.78□□□□□ -0.2
VPS52-218ENST00000482399 PPP1R9AQ9ULJ8 1098 aa13.78□□□□□ -0.2
VPS52-218ENST00000482399 CCDC169A6NNP5 214 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FSBPO95073 299 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FGRP09769 529 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 HP1BP3Q5SSJ5 553 aaPredicted RBP13.77□□□□□ -0.2
VPS52-218ENST00000482399 SEL1L2Q5TEA6 688 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FAM47EQ6ZV65 393 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FUKQ8N0W3 1084 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 EPS8L3Q8TE67 593 aaKnown RBP13.77□□□□□ -0.2
VPS52-218ENST00000482399 C18orf8Q96DM3 657 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 HOOK2Q96ED9 719 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 SGSM3Q96HU1 749 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FAM118BQ9BPY3 351 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 DHX36Q9H2U1 1008 aaKnown RBP13.77□□□□□ -0.2
VPS52-218ENST00000482399 YY1AP1Q9H869 796 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 THRAP3Q9Y2W1 955 aaKnown RBP13.77□□□□□ -0.2
VPS52-218ENST00000482399 PCDHGC5Q9Y5F6 944 aa13.77□□□□□ -0.2
VPS52-218ENST00000482399 FOXO6A8MYZ6 492 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 CCDC188H7C350 402 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 TRIM37O94972 964 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 TAB3Q8N5C8 712 aaPredicted RBP13.77□□□□□ -0.21
VPS52-218ENST00000482399 CCDC127Q96BQ5 260 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 DNAJC19Q96DA6 116 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 MTMR9Q96QG7 549 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 FAM167BQ9BTA0 163 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 ANO3Q9BYT9 981 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 JMJD4Q9H9V9 463 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 LRRC4CQ9HCJ2 640 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 GGA1Q9UJY5 639 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 BCL9O00512 1426 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 PNMA6FA0A0J9YX94 578 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 M0R2N6 131 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 HLA-DOAP06340 250 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 FXR2P51116 673 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS52-218ENST00000482399 LONRF1Q17RB8 773 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 ANKRD20A8PQ5CZ79 823 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 LINC00116Q8NCU8 138 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 KLHL29Q96CT2 875 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 EDEM3Q9BZQ6 932 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 SEMA4AQ9H3S1 761 aa13.77□□□□□ -0.21
VPS52-218ENST00000482399 BZW2Q9Y6E2 419 aaKnown RBP13.77□□□□□ -0.21
VPS52-218ENST00000482399 RASGRF2O14827 1237 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 TRAPPC3O43617 180 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 ASTE1Q2TB18 679 aaPredicted RBP13.76□□□□□ -0.21
VPS52-218ENST00000482399 PPM1KQ8N3J5 372 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 BTBD6Q96KE9 485 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 THAP2Q9H0W7 228 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 MTMR4Q9NYA4 1195 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 RABGAP1Q9Y3P9 1069 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 ZBTB39O15060 712 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 GDF11O95390 407 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 TTLL1O95922 423 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 PDIA5Q14554 519 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 ODR4Q5SWX8 454 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 TMC3Q7Z5M5 1100 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 FAM178BQ8IXR5 827 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 HAS1Q92839 578 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 TMX4Q9H1E5 349 aaPredicted RBP13.76□□□□□ -0.21
VPS52-218ENST00000482399 CD209Q9NNX6 404 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 UBE2TQ9NPD8 197 aaPredicted RBP13.76□□□□□ -0.21
VPS52-218ENST00000482399 SERPINB13Q9UIV8 391 aa13.76□□□□□ -0.21
VPS52-218ENST00000482399 F8VZ95 297 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 TNIP1Q15025 636 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 QRICH1Q2TAL8 776 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 ASPRV1Q53RT3 343 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 UBL4BQ8N7F7 174 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 CYP2W1Q8TAV3 490 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 NAP1L3Q99457 506 aaPredicted RBP13.75□□□□□ -0.21
VPS52-218ENST00000482399 CCNL1Q9UK58 526 aaPredicted RBP13.75□□□□□ -0.21
VPS52-218ENST00000482399 DDX3XO00571 662 aaKnown RBP eCLIP13.75□□□□□ -0.219e-9■□□□□ 9.1
VPS52-218ENST00000482399 GCKP35557 465 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 COG2Q14746 738 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 CYP4F22Q6NT55 531 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 PTF1AQ7RTS3 328 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 CATSPER3Q86XQ3 398 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 SLF2Q8IX21 1173 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 RBM46Q8TBY0 533 aaKnown RBP13.75□□□□□ -0.21
VPS52-218ENST00000482399 FGFR1OP2Q9NVK5 253 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 KIF1AQ12756 1690 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 TNS2Q63HR2 1409 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 EEF2P13639 858 aaKnown RBP13.75□□□□□ -0.21
VPS52-218ENST00000482399 FERP16591 822 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 FNTAP49354 379 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 CETN1Q12798 172 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 C1orf54Q8WWF1 131 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 RUBCNQ92622 972 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 STAMBPL1Q96FJ0 436 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 ACP6Q9NPH0 428 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 TAS2R14Q9NYV8 317 aa13.75□□□□□ -0.21
VPS52-218ENST00000482399 TCP11X1B4DZS4 312 aa13.74□□□□□ -0.21
VPS52-218ENST00000482399 MYBL1P10243 752 aa13.74□□□□□ -0.21
VPS52-218ENST00000482399 STX2P32856 288 aa13.74□□□□□ -0.21
VPS52-218ENST00000482399 SWT1Q5T5J6 900 aaKnown RBP13.74□□□□□ -0.21
VPS52-218ENST00000482399 SEPT14Q6ZU15 432 aa13.74□□□□□ -0.21
VPS52-218ENST00000482399 GSTA5Q7RTV2 222 aa13.74□□□□□ -0.21
VPS52-218ENST00000482399 VSIG1Q86XK7 387 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms