RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SLC41A1Q8IVJ1 513 aa6.59□□□□□ -1.35
UPF3B-203ENST00000478840 SIRT2Q8IXJ6 389 aa6.59□□□□□ -1.35
UPF3B-203ENST00000478840 DIS3LQ8TF46 1054 aaKnown RBP6.59□□□□□ -1.35
UPF3B-203ENST00000478840 FAM193BQ96PV7 902 aaPredicted RBP6.59□□□□□ -1.35
UPF3B-203ENST00000478840 MYL10Q9BUA6 226 aa6.59□□□□□ -1.35
UPF3B-203ENST00000478840 GTPBP4Q9BZE4 634 aaKnown RBP6.59□□□□□ -1.35
UPF3B-203ENST00000478840 SAP30BPQ9UHR5 308 aaKnown RBP6.59□□□□□ -1.35
UPF3B-203ENST00000478840 DNM3Q9UQ16 869 aa6.59□□□□□ -1.35
UPF3B-203ENST00000478840 IFRD1O00458 451 aaPredicted RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 COBLO75128 1261 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 PFKMP08237 780 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 NBPF7P0C2Y1 421 aaPredicted RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 ZNF280AP59817 542 aaPredicted RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 ERVFRD-1P60508 538 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 ALDH6A1Q02252 535 aaKnown RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 ZNF267Q14586 743 aaPredicted RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 TIGD5Q53EQ6 642 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 COBLL1Q53SF7 1204 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 ZNF574Q6ZN55 896 aaPredicted RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 NFXL1Q6ZNB6 911 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 DTX1Q86Y01 620 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 FERMT2Q96AC1 680 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 COA7Q96BR5 231 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 TSPAN17Q96FV3 270 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 TUBGCP5Q96RT8 1024 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 STRBPQ96SI9 672 aaKnown RBP6.58□□□□□ -1.36
UPF3B-203ENST00000478840 CCDC39Q9UFE4 941 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 SERPINB13Q9UIV8 391 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 EDARQ9UNE0 448 aa6.58□□□□□ -1.36
UPF3B-203ENST00000478840 APAF1O14727 1248 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 MPIG6BO95866 241 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 ZBED1O96006 694 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 IFIT2P09913 472 aaKnown RBP6.57□□□□□ -1.36
UPF3B-203ENST00000478840 RHCEP18577 417 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 RHDQ02161 417 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 ROM1Q03395 351 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 GRIN1Q05586 938 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 ADCY2Q08462 1091 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 NR1I3Q14994 352 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 PRSS36Q5K4E3 855 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 IL31Q6EBC2 164 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 USP45Q70EL2 814 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 CATIPQ7Z7H3 387 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 MIB1Q86YT6 1006 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 THEMISQ8N1K5 641 aaPredicted RBP6.57□□□□□ -1.36
UPF3B-203ENST00000478840 HIPK4Q8NE63 616 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 TSPEARQ8WU66 669 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 IL17RAQ96F46 866 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 KCTD10Q9H3F6 313 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 PRDM12Q9H4Q4 367 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 DENND2AQ9ULE3 1009 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 WASF3Q9UPY6 502 aa6.57□□□□□ -1.36
UPF3B-203ENST00000478840 ST20-MTHFSA0A0A6YYL1 179 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 PRAMEF22A3QJZ6 481 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 A6NNZ2 444 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 H3BML4 177 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 LPLP06858 475 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 SPINK2P20155 84 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 PDCP20941 246 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 WASP42768 502 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 NEK3P51956 506 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 GJA9P57773 515 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 ERVFC1P60507 584 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 KIF23Q02241 960 aaPredicted RBP6.56□□□□□ -1.36
UPF3B-203ENST00000478840 TRIM25Q14258 630 aaKnown RBP6.56□□□□□ -1.36
UPF3B-203ENST00000478840 PRAMEF18Q5VWM3 479 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 SLFN12LQ6IEE8 588 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 FAM126BQ8IXS8 530 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 C1GALT1C1Q96EU7 318 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 SLC2A13Q96QE2 648 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 MAP3K14Q99558 947 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 ACO2Q99798 780 aaKnown RBP6.56□□□□□ -1.36
UPF3B-203ENST00000478840 FAM204AQ9H8W3 233 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 IFT122Q9HBG6 1241 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 PAK6Q9NQU5 681 aaPredicted RBP6.56□□□□□ -1.36
UPF3B-203ENST00000478840 PRDM7Q9NQW5 492 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 DTLQ9NZJ0 730 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 GPR160Q9UJ42 338 aa6.56□□□□□ -1.36
UPF3B-203ENST00000478840 ZC3H12DA2A288 527 aaKnown RBP6.55□□□□□ -1.36
UPF3B-203ENST00000478840 KIAA1324LA8MWY0 1029 aaPredicted RBP6.55□□□□□ -1.36
UPF3B-203ENST00000478840 NFIBO00712 420 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 TPP1O14773 563 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 TUSC2O75896 110 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 LRG1P02750 347 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 PTGS1P23219 599 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 THBS2P35442 1172 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 GPR15P49685 360 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 SLC16A1P53985 500 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 LGALS4P56470 323 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 BCAR1P56945 870 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 SLC6A3Q01959 620 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 SAFB2Q14151 953 aaKnown RBP eCLIP6.55□□□□□ -1.36
UPF3B-203ENST00000478840 CD276Q5ZPR3 534 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 UNQ6494/PRO21346Q6UXR6 183 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 OVCH2Q7RTZ1 564 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 SPICE1Q8N0Z3 855 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 ZBTB34Q8NCN2 500 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.55□□□□□ -1.36
UPF3B-203ENST00000478840 OR14C36Q8NHC7 312 aa6.55□□□□□ -1.36
UPF3B-203ENST00000478840 ERCC4Q92889 916 aaPredicted RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms