RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TTC14Q96N46 770 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 TMEM47Q9BQJ4 181 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 DSCC1Q9BVC3 393 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 OSBPL1AQ9BXW6 950 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 PRO3102Q9H379 93 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 ACAD9Q9H845 621 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 HOMER2Q9NSB8 354 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 CTNNA3Q9UI47 895 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 ZMYND8Q9ULU4 1186 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 MTMR7Q9Y216 660 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 LTBP2Q14767 1821 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 A0A1W2PPC1 479 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 ZNF865P0CJ78 1059 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 GSPT1P15170 499 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 SYN1P17600 705 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 LRRC41Q15345 812 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 IMMTQ16891 758 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 CCDC178Q5BJE1 867 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 CCDC174Q6PII3 467 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 RASGRP2Q7LDG7 609 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 RNF180Q86T96 592 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 IQCA1Q86XH1 822 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 SMG8Q8ND04 991 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 GPR152Q8TDT2 470 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 CALR3Q96L12 384 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 XPNPEP3Q9NQH7 507 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 RNF146Q9NTX7 359 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 FAM13BQ9NYF5 915 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 TMEM63CQ9P1W3 806 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 CNTN3Q9P232 1028 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 SOX13Q9UN79 622 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 FNDC3AQ9Y2H6 1198 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 LRRC37A2A6NM11 1700 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 ZNF536O15090 1300 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 NEDD4P46934 1319 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 FRMPD2Q68DX3 1309 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 RAD50Q92878 1312 aa7.97□□□□□ -1.13
CCDC88A-213ENST00000476903 GAS2O43903 313 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 SNAI1O95863 264 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 DLGAP3O95886 979 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ICAM1P05362 532 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 PDHBP11177 359 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ALAS1P13196 640 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 BMP8BP34820 402 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 SLC16A2P36021 539 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 SNAP25P60880 206 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 SYDE2Q5VT97 1194 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 TTBK2Q6IQ55 1244 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 BTNL9Q6UXG8 535 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ARMCX2Q7L311 632 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 DGKHQ86XP1 1220 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 GIMAP7Q8NHV1 300 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 RUFY2Q8WXA3 655 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 GATA6Q92908 595 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 HHIPQ96QV1 700 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 GDF15Q99988 308 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 RANBP17Q9H2T7 1088 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ABHD16BQ9H3Z7 469 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 CNNM2Q9H8M5 875 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 SUGCTQ9HAC7 445 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 A1CFQ9NQ94 594 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 DZANK1Q9NVP4 752 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 PRKAG2Q9UGJ0 569 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ZHX1Q9UKY1 873 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 PNMA2Q9UL42 364 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 FAM184BQ9ULE4 1060 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 CCPG1Q9ULG6 757 aa7.96□□□□□ -1.14
CCDC88A-213ENST00000476903 ASB14A6NK59 587 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 B4E1Z4 1266 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 PRMT3O60678 531 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 DUSP11O75319 330 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 PGK1P00558 417 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 ADCYAP1R1P41586 468 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 MAGEA10P43363 369 aaPredicted RBP7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 RTP1P59025 263 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 CNTN2Q02246 1040 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 ZNF543Q08ER8 600 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 ACVR2BQ13705 512 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 SNX17Q15036 470 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 SWI5Q1ZZU3 235 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 MUM1L1Q5H9M0 696 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 GPATCH4Q5T3I0 446 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 CDPF1Q6NVV7 123 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 SLC39A5Q6ZMH5 540 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 TP53INP2Q8IXH6 220 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 CCDC144CPQ8IYA2 1237 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 FAM133AQ8N9E0 248 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 FGD4Q96M96 766 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 ZKSCAN3Q9BRR0 538 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 KRT23Q9C075 422 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 KAT14Q9H8E8 782 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 CYP39A1Q9NYL5 469 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 KANSL3Q9P2N6 904 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 ATP11BQ9Y2G3 1177 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 SYNRGQ9UMZ2 1314 aa7.95□□□□□ -1.14
CCDC88A-213ENST00000476903 LAMA3Q16787 3333 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 PAPLNO95428 1278 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 SNHG28P0DPA3 235 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 CHMLP26374 656 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 CCDC144BQ3MJ40 725 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms