RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 IFIT2P09913 472 aaKnown RBP9.35□□□□□ -0.91
USP54-211ENST00000474929 CTSAP10619 480 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 NOVA1P51513 510 aaKnown RBP9.35□□□□□ -0.91
USP54-211ENST00000474929 C19orf57Q0VDD7 668 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 LPAL2Q16609 132 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 GPATCH4Q5T3I0 446 aaKnown RBP9.35□□□□□ -0.91
USP54-211ENST00000474929 MAMSTRQ6ZN01 415 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 LURAP1LQ8IV03 231 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 SLC39A11Q8N1S5 342 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 SLC22A17Q8WUG5 538 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 DNAJB3Q8WWF6 145 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 RSAD2Q8WXG1 361 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 MYADMQ96S97 322 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 PDCD2LQ9BRP1 358 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 ZBP1Q9H171 429 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 RGS18Q9NS28 235 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 CACNA2D2Q9NY47 1150 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 MTMR7Q9Y216 660 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 NEUROG3Q9Y4Z2 214 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 C2orf16Q68DN1 1984 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 NBEAQ8NFP9 2946 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 RRN3P2A6NIE6 340 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 ANHXE9PGG2 379 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 TOP1P11387 765 aaKnown RBP9.34□□□□□ -0.91
USP54-211ENST00000474929 CCND2P30279 289 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 NOVP48745 357 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 ALDH7A1P49419 539 aaKnown RBP9.34□□□□□ -0.91
USP54-211ENST00000474929 HTR4Q13639 388 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 GRIK4Q16099 956 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 STPG1Q5TH74 334 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 MTSS1LQ765P7 747 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 NME8Q8N427 588 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 GIMAP8Q8ND71 665 aaPredicted RBP9.34□□□□□ -0.91
USP54-211ENST00000474929 CHMP4CQ96CF2 233 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 LOXL4Q96JB6 756 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 PUS7LQ9H0K6 701 aaKnown RBP9.34□□□□□ -0.91
USP54-211ENST00000474929 ERAP1Q9NZ08 941 aa9.34□□□□□ -0.91
USP54-211ENST00000474929 C9IYK1 514 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 GPR182O15218 404 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 LRRN2O75325 713 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 APPP05067 770 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 ZNF806P0C7X5 589 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 IBSPP21815 317 aaPredicted RBP9.33□□□□□ -0.92
USP54-211ENST00000474929 NFX1Q12986 1120 aaKnown RBP9.33□□□□□ -0.92
USP54-211ENST00000474929 FAM102BQ5T8I3 360 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 TTBK2Q6IQ55 1244 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 ZNF852Q6ZMS4 543 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 TRIM50Q86XT4 487 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 VPS52Q8N1B4 723 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 ADAM32Q8TC27 787 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 BBXQ8WY36 941 aaPredicted RBP9.33□□□□□ -0.92
USP54-211ENST00000474929 PHKBQ93100 1093 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 CELF4Q9BZC1 486 aaKnown RBP9.33□□□□□ -0.92
USP54-211ENST00000474929 MRS2Q9HD23 443 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 COL20A1Q9P218 1284 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 WASF3Q9UPY6 502 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 NUMBLQ9Y6R0 609 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 ADAMTS20P59510 1910 aa9.33□□□□□ -0.92
USP54-211ENST00000474929 SORBS3O60504 671 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 LILRB3O75022 631 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 N4BP1O75113 896 aaKnown RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 RPS6KA5O75582 802 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 BCAR3O75815 825 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 ZFYP08048 801 aaPredicted RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 PDHBP11177 359 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 MYCLP12524 364 aaPredicted RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 LAMP2P13473 410 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 CLCN4P51793 760 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 KRT76Q01546 638 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 GHRHRQ02643 423 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 ADCY1Q08828 1119 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 ZNF543Q08ER8 600 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 SNW1Q13573 536 aaKnown RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 CDC37Q16543 378 aaPredicted RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 SLC44A4Q53GD3 710 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 DAB2IPQ5VWQ8 1189 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 TSSK4Q6SA08 328 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 VSIG10LQ86VR7 867 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 PROSER1Q86XN7 944 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 APPBP2Q92624 585 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 ADAM2Q99965 735 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 SCNM1Q9BWG6 230 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 EPB41L4AQ9HCS5 686 aaPredicted RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 GPCPD1Q9NPB8 672 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 FAM217BQ9NTX9 383 aaPredicted RBP9.32□□□□□ -0.92
USP54-211ENST00000474929 SSX2IPQ9Y2D8 614 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 GPSM3Q9Y4H4 160 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 PCDHGA5Q9Y5G8 931 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 DOCK8Q8NF50 2099 aa9.32□□□□□ -0.92
USP54-211ENST00000474929 LAMA4Q16363 1823 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 LOC400499M0QZD8 3231 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 FIBPO43427 364 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 CFBP00751 764 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 FGFR1P11362 822 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 TDGF1P13385 188 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 CEACAM1P13688 526 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 ATP5JP18859 108 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 KLRC2P26717 231 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 HSD17B4P51659 736 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 PPARAQ07869 468 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms