RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SCUBE1Q8IWY4 988 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 THEMISQ8N1K5 641 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 RABGGTAQ92696 567 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 DLG3Q92796 817 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 FOXRED1Q96CU9 486 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 CRAMP1Q96RY5 1269 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 PARPBPQ9NWS1 579 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 REXO2Q9Y3B8 237 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 TRBV23-1A0A0A0MS06 115 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 RAMP2O60895 175 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 CRTAMO95727 393 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 ATP2C1P98194 919 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 CRY1Q16526 586 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 CATSPEREQ5SY80 951 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 DPH6Q7L8W6 267 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 MRGPREQ86SM8 312 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 CISD2Q8N5K1 135 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 GPR150Q8NGU9 434 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 NTN5Q8WTR8 489 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 MPHOSPH9Q99550 1183 aa5.53□□□□□ -1.52
CCDC88A-212ENST00000474059 PRAMEF22A3QJZ6 481 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 KLRG2A4D1S0 409 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 C2orf78A6NCI8 922 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 DIAPH1O60610 1272 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 FBLP22087 321 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 NR4A1P22736 598 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 RABGGTBP53611 331 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 ZC3H6P61129 1189 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 HHEXQ03014 270 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 RTN4RL1Q86UN2 441 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 GBP4Q96PP9 640 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 FAM184BQ9ULE4 1060 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 R3HCC1Q9Y3T6 440 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 ASB1Q9Y576 335 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 B3GALT1Q9Y5Z6 326 aa5.52□□□□□ -1.53
CCDC88A-212ENST00000474059 GRXCR1A8MXD5 290 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 GOLGA6L22H0YM25 854 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 SCDO00767 359 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 CYP27B1O15528 508 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 RPS6KA4O75676 772 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 SDHAP31040 664 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 DNM2P50570 870 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 SUMO1P63165 101 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 GNL2Q13823 731 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 DPY19L2P1Q6NXN4 242 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 ZBTB38Q8NAP3 1195 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 SLC43A3Q8NBI5 491 aa5.51□□□□□ -1.53
CCDC88A-212ENST00000474059 FOXP2O15409 715 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 RASGRP1O95267 797 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 TCF3P15923 654 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 ANTXR2P58335 489 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 CRHR2Q13324 411 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 LAIR1Q6GTX8 287 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 HTR3DQ70Z44 454 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 OVCH1Q7RTY7 1134 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 KCNH7Q9NS40 1196 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 TRPS1Q9UHF7 1281 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 MAGEL2Q9UJ55 1249 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 COQ6Q9Y2Z9 468 aa5.5□□□□□ -1.53
CCDC88A-212ENST00000474059 A0A1W2PRX2 142 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 FAM153BP0C7A2 387 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 KCNA6P17658 529 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 BMP5P22003 454 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 ZFP36P26651 326 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 ALDH6A1Q02252 535 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 LRCH2Q5VUJ6 765 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 ABHD17CQ6PCB6 329 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 GSTCDQ8NEC7 633 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 NKD2Q969F2 451 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 MIEF2Q96C03 454 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 MLST8Q9BVC4 326 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 NRDE2Q9H7Z3 1164 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 SLC52A2Q9HAB3 445 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 PFDN2Q9UHV9 154 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 VWA7Q9Y334 891 aa5.49□□□□□ -1.53
CCDC88A-212ENST00000474059 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 PDPK1O15530 556 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 ZBTB48P10074 688 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 APEX1P27695 318 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 GABREP78334 506 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 MBNL2Q5VZF2 373 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 GAREM2Q75VX8 874 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 VRK3Q8IV63 474 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 ANKRD35Q8N283 1001 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 SCLYQ96I15 445 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 SLC6A15Q9H2J7 730 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 XDHP47989 1333 aa5.48□□□□□ -1.53
CCDC88A-212ENST00000474059 GRID2IPA4D2P6 1211 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 TRAF5O00463 557 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 FAM20BO75063 409 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 PPFIA2O75334 1257 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 MAN2A2P49641 1150 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 FSTL1Q12841 308 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 RASGRF1Q13972 1273 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 FAM47CQ5HY64 1035 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 KLHDC10Q6PID8 442 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 ZC3H7AQ8IWR0 971 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 HOMEZQ8IX15 550 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 ANKRD53Q8N9V6 530 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 HIPK4Q8NE63 616 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms