RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 H0YCG3 227 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 PDXKO00764 312 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 CALUO43852 315 aaPredicted RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 GAS2O43903 313 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 GCNT3O95395 438 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 XRCC5P13010 732 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 ATP1A3P13637 1013 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 PLS3P13797 630 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 MAP2K2P36507 400 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 RFC5P40937 340 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 SMTNP53814 917 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 FKBP3Q00688 224 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 ARHGAP1Q07960 439 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 MAPK7Q13164 816 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 KIF22Q14807 665 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 KNOP1Q1ED39 458 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 DUSP28Q4G0W2 176 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 UTP14CQ5TAP6 766 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 ANKRD40Q6AI12 368 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 PPTC7Q8NI37 304 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 SCFD1Q8WVM8 642 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 BBXQ8WY36 941 aaPredicted RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 HVCN1Q96D96 273 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 CEP63Q96MT8 703 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 DUSP9Q99956 384 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 JPH2Q9BR39 696 aaPredicted RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 SRRTQ9BXP5 876 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 XPO4Q9C0E2 1151 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 SEMA6BQ9H3T3 888 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 ST6GALNAC4Q9H4F1 302 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 ATP6V0A4Q9HBG4 840 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 PRDM10Q9NQV6 1147 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 WBP1LQ9NX94 342 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 TBC1D7Q9P0N9 293 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 IMPACTQ9P2X3 320 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 LIMA1Q9UHB6 759 aaKnown RBP14.16□□□□□ -0.14
VPS13D-205ENST00000473099 NRBP1Q9UHY1 535 aa14.16□□□□□ -0.14
VPS13D-205ENST00000473099 TRIM49BA6NDI0 452 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 KCNJ18B7U540 433 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 GNA14O95837 355 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 POLGP54098 1239 aaPredicted RBP14.15□□□□□ -0.14
VPS13D-205ENST00000473099 NPEPPSP55786 919 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 KCNJ12Q14500 433 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 LRRC41Q15345 812 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 HSDL1Q3SXM5 330 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 ZCWPW2Q504Y3 356 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 TCP11X2Q5H9J9 407 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 PLA2G4FQ68DD2 849 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 ZNF720Q7Z2F6 126 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 DAW1Q8N136 415 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 GOLGA5Q8TBA6 731 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 GLG1Q92896 1179 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 PCYT2Q99447 389 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 KCTD10Q9H3F6 313 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 PDGFCQ9NRA1 345 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 TYW1Q9NV66 732 aaKnown RBP14.15□□□□□ -0.14
VPS13D-205ENST00000473099 CGNQ9P2M7 1197 aaKnown RBP14.15□□□□□ -0.14
VPS13D-205ENST00000473099 GJD2Q9UKL4 321 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 ZHX1Q9UKY1 873 aaPredicted RBP14.15□□□□□ -0.14
VPS13D-205ENST00000473099 TRAF3IP3Q9Y228 551 aa14.15□□□□□ -0.14
VPS13D-205ENST00000473099 A0A1B0GTH6 734 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 SORBS3O60504 671 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 PRKCSHP14314 528 aaPredicted RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 RPL13P26373 211 aaKnown RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 PMS1P54277 932 aaKnown RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 SNRPFP62306 86 aaKnown RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 LACTBP83111 547 aaPredicted RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 DMP1Q13316 513 aaPredicted RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 PPP2R5AQ15172 486 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 NFIL3Q16649 462 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 MTERF2Q49AM1 385 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 ATP8B4Q8TF62 1192 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 SPIRE2Q8WWL2 714 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 SLC7A3Q8WY07 619 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 IFT74Q96LB3 600 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 ZIC5Q96T25 663 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 DHX33Q9H6R0 707 aaKnown RBP14.14□□□□□ -0.15
VPS13D-205ENST00000473099 TMEM206Q9H813 350 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 PDLIM7Q9NR12 457 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 ERAP1Q9NZ08 941 aa14.14□□□□□ -0.15
VPS13D-205ENST00000473099 COL1A2P08123 1366 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 SFI1A8K8P3 1242 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 K7ENM7 598 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 CETN3O15182 167 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 HBP1O60381 514 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 AOC2O75106 756 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 PPFIA4O75335 1185 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 ATP4AP20648 1035 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 ADCYAP1R1P41586 468 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 PSMC4P43686 418 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 LBX1P52954 281 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 NCKAP1LP55160 1127 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 GSDMDP57764 484 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TNFAIP2Q03169 654 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 EMC2Q15006 297 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 KRT31Q15323 416 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 TARBP2Q15633 366 aaKnown RBP14.13□□□□□ -0.15
VPS13D-205ENST00000473099 CCDC144BQ3MJ40 725 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 FAM102BQ5T8I3 360 aa14.13□□□□□ -0.15
VPS13D-205ENST00000473099 HS2ST1Q7LGA3 356 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms