RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 CEP89Q96ST8 783 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 OSMRQ99650 979 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 ADAMTS10Q9H324 1103 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 SEPT9Q9UHD8 586 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 ST3GAL5Q9UNP4 418 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 TRANK1O15050 2925 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 UNC80Q8N2C7 3258 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 IGKV6-21A0A0C4DH24 114 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 DGKIO75912 1065 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 P4HBP07237 508 aaKnown RBP13.43□□□□□ -0.26
SYNE1-221ENST00000472563 STAG3L1P0CL83 205 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 NLRP11P59045 1033 aaKnown RBP13.43□□□□□ -0.26
SYNE1-221ENST00000472563 CDC42EP1Q00587 391 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 SPIRE1Q08AE8 756 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 EPHA7Q15375 998 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 MTERF2Q49AM1 385 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 EPC2Q52LR7 807 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 ANO5Q75V66 913 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 NPAS4Q8IUM7 802 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 TMEM192Q8IY95 271 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 MICALL1Q8N3F8 863 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 FIBCD1Q8N539 461 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 ATXN2LQ8WWM7 1075 aaKnown RBP13.43□□□□□ -0.26
SYNE1-221ENST00000472563 C8orf76Q96K31 380 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 DOCK5Q9H7D0 1870 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 PRDM6Q9NQX0 595 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 RGS18Q9NS28 235 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 THEGQ9P2T0 379 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 AKT3Q9Y243 479 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 PPME1Q9Y570 386 aa13.43□□□□□ -0.26
SYNE1-221ENST00000472563 TRIP12Q14669 1992 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-221ENST00000472563 ADGRA3Q8IWK6 1321 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 CUL9Q8IWT3 2517 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 TMEM150BA6NC51 233 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 MGEA5O60502 916 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 MAFO75444 373 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 EIF4BP23588 611 aaKnown RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 SARSP49591 514 aaKnown RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 DNM2P50570 870 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 FOSBP53539 338 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 FAM189BP81408 668 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 SLC24A5Q71RS6 500 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 FAM228AQ86W67 206 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 FBXO18Q8NFZ0 1043 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 CLP1Q92989 425 aaKnown RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 PPP1R16BQ96T49 567 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 ADAM2Q99965 735 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 JPH2Q9BR39 696 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 UPF2Q9HAU5 1272 aaKnown RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 C1orf112Q9NSG2 853 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 RNF216Q9NWF9 866 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-221ENST00000472563 RWDD3Q9Y3V2 267 aa13.42□□□□□ -0.26
SYNE1-221ENST00000472563 COL4A6Q14031 1691 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 DENND3A2RUS2 1198 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 C9IYK1 514 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 C5orf67F2Z3F1 127 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 H3BNC9 293 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 NEMFO60524 1076 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 RB1P06400 928 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 LINC00271P0C7V0 271 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 DARSP14868 501 aaKnown RBP13.41□□□□□ -0.26
SYNE1-221ENST00000472563 BMPR1AP36894 532 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 GPC3P51654 580 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 GUCY1B3Q02153 619 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 BTG3Q14201 252 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-221ENST00000472563 DSC3Q14574 896 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 CALCRLQ16602 461 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 NCAPH2Q6IBW4 605 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 C4orf19Q8IY42 314 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 EXOC8Q8IYI6 725 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 CMTR2Q8IYT2 770 aaKnown RBP13.41□□□□□ -0.26
SYNE1-221ENST00000472563 FAM184AQ8NB25 1140 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 MTMR9Q96QG7 549 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 FOXP1Q9H334 677 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-221ENST00000472563 ZSWIM4Q9H7M6 989 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 CYP26B1Q9NR63 512 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 PCDHA12Q9UN75 941 aa13.41□□□□□ -0.26
SYNE1-221ENST00000472563 WNT7AO00755 349 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 ST18O60284 1047 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 MRPS5P82675 430 aaKnown RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 DRP2Q13474 957 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 GPM6BQ13491 265 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 SKIV2LQ15477 1246 aaKnown RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 PTPROQ16827 1216 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 TJAP1Q5JTD0 557 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 PLA2G4FQ68DD2 849 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 OTUD6AQ7L8S5 288 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 NLRP7Q8WX94 980 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 SLC7A3Q8WY07 619 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 MRPL38Q96DV4 380 aaKnown RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 DYDC2Q96IM9 177 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 ASB2Q96Q27 587 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 HSD17B14Q9BPX1 270 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 SH2D3AQ9BRG2 576 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 LXNQ9BS40 222 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 COL25A1Q9BXS0 654 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 TTC12Q9H892 705 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 RGL1Q9NZL6 768 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 SUCLA2Q9P2R7 463 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-221ENST00000472563 WRAP73Q9P2S5 460 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms