RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ERVK-5Q9HDB9 667 aa21.48■■□□□ 1.03
COL7A1-207ENST00000467985 AKT3Q9Y243 479 aa21.48■■□□□ 1.03
COL7A1-207ENST00000467985 DENND3A2RUS2 1198 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 C5orf67F2Z3F1 127 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 TBX3O15119 743 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 SLC37A4O43826 429 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 GPR32O75388 356 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 VTNP04004 478 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 CTNNB1P35222 781 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 KRT2P35908 639 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 BMPR1AP36894 532 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 TBC1D8BQ0IIM8 1120 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 PIK3AP1Q6ZUJ8 805 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 LINC01465Q8N7H1 131 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 TMEM40Q8WWA1 233 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 C11orf84Q9BUA3 381 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-207ENST00000467985 NIFKQ9BYG3 293 aaKnown RBP21.47■■□□□ 1.03
COL7A1-207ENST00000467985 TMX1Q9H3N1 280 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 KCNMB3Q9NPA1 279 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 C1orf112Q9NSG2 853 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 LRFN2Q9ULH4 789 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 ST3GAL5Q9UNP4 418 aa21.47■■□□□ 1.03
COL7A1-207ENST00000467985 CCNT1O60563 726 aaKnown RBP21.46■■□□□ 1.03
COL7A1-207ENST00000467985 SEC24BO95487 1268 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 FDPSP14324 419 aaKnown RBP21.46■■□□□ 1.03
COL7A1-207ENST00000467985 SARSP49591 514 aaKnown RBP21.46■■□□□ 1.03
COL7A1-207ENST00000467985 CLCN3P51790 818 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 CDC42EP1Q00587 391 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 PPP2R5CQ13362 524 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 TIGD5Q53EQ6 642 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 CMTR2Q8IYT2 770 aaKnown RBP21.46■■□□□ 1.03
COL7A1-207ENST00000467985 OXER1Q8TDS5 423 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 ADAMTS19Q8TE59 1207 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 OSMRQ99650 979 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 RGS18Q9NS28 235 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 GJB4Q9NTQ9 266 aa21.46■■□□□ 1.03
COL7A1-207ENST00000467985 DKC1O60832 514 aaKnown RBP eCLIP21.45■■□□□ 1.02
COL7A1-207ENST00000467985 LARGE1O95461 756 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 NLRP11P59045 1033 aaKnown RBP21.45■■□□□ 1.02
COL7A1-207ENST00000467985 PSMC5P62195 406 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 TFF2Q03403 129 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 TRIM29Q14134 588 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 TARBP2Q15633 366 aaKnown RBP21.45■■□□□ 1.02
COL7A1-207ENST00000467985 SLC24A5Q71RS6 500 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 NSUN7Q8NE18 718 aaKnown RBP21.45■■□□□ 1.02
COL7A1-207ENST00000467985 ADAM2Q99965 735 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 PLVAPQ9BX97 442 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 LMAN2LQ9H0V9 348 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 SEPT9Q9UHD8 586 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-207ENST00000467985 PCDHB7Q9Y5E2 793 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 BRWD1Q9NSI6 2320 aa21.45■■□□□ 1.02
COL7A1-207ENST00000467985 MARCH6O60337 910 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 BMP1P13497 986 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 DNM2P50570 870 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 FAM228AQ86W67 206 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 LRRC71Q8N4P6 559 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 PPP1R16BQ96T49 567 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 ADAMTS10Q9H324 1103 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 VAV3Q9UKW4 847 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 LIMCH1Q9UPQ0 1083 aa21.44■■□□□ 1.02
COL7A1-207ENST00000467985 TNFRSF10AO00220 468 aa21.43■■□□□ 1.02
COL7A1-207ENST00000467985 BAG4O95429 457 aaKnown RBP21.43■■□□□ 1.02
COL7A1-207ENST00000467985 LINC00271P0C7V0 271 aa21.43■■□□□ 1.02
COL7A1-207ENST00000467985 EIF4BP23588 611 aaKnown RBP21.43■■□□□ 1.02
COL7A1-207ENST00000467985 NAALADL2Q58DX5 795 aa21.43■■□□□ 1.02
COL7A1-207ENST00000467985 SLFN12Q8IYM2 578 aa21.43■■□□□ 1.02
COL7A1-207ENST00000467985 UHRF1Q96T88 793 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-207ENST00000467985 JPH2Q9BR39 696 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-207ENST00000467985 DDX11L8A8MPP1 907 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 MGEA5O60502 916 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 DTNBO60941 627 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 STBD1O95210 358 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 MMP1P03956 469 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 QARSP47897 775 aaKnown RBP21.42■■□□□ 1.02
COL7A1-207ENST00000467985 NR5A1Q13285 461 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 MTERF2Q49AM1 385 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 EXOC8Q8IYI6 725 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 BANK1Q8NDB2 785 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 TNFRSF25Q93038 417 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 P2RX5Q93086 422 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 SCLT1Q96NL6 688 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 PPME1Q9Y570 386 aa21.42■■□□□ 1.02
COL7A1-207ENST00000467985 MRPL42Q9Y6G3 142 aaKnown RBP21.42■■□□□ 1.02
COL7A1-207ENST00000467985 C9IYK1 514 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 P4HBP07237 508 aaKnown RBP21.41■■□□□ 1.02
COL7A1-207ENST00000467985 GPC3P51654 580 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 KCNQ1P51787 676 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 FAM189BP81408 668 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 NLRP7Q8WX94 980 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 HAS1Q92839 578 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 NSUN3Q9H649 340 aaKnown RBP21.41■■□□□ 1.02
COL7A1-207ENST00000467985 ELAC1Q9H777 363 aaKnown RBP21.41■■□□□ 1.02
COL7A1-207ENST00000467985 UBE2ZQ9H832 354 aaPredicted RBP21.41■■□□□ 1.02
COL7A1-207ENST00000467985 TMEM161AQ9NX61 479 aa21.41■■□□□ 1.02
COL7A1-207ENST00000467985 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-207ENST00000467985 IGKV6-21A0A0C4DH24 114 aa21.4■■□□□ 1.02
COL7A1-207ENST00000467985 EML1O00423 815 aa21.4■■□□□ 1.02
COL7A1-207ENST00000467985 NCK2O43639 380 aa21.4■■□□□ 1.02
COL7A1-207ENST00000467985 JAK2O60674 1132 aa21.4■■□□□ 1.02
COL7A1-207ENST00000467985 MAFO75444 373 aaPredicted RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms