RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ERVK-5Q9HDB9 667 aa15.72■□□□□ 0.11
USP4-206ENST00000461553 C1orf112Q9NSG2 853 aa15.72■□□□□ 0.11
USP4-206ENST00000461553 NRBP2Q9NSY0 501 aa15.72■□□□□ 0.11
USP4-206ENST00000461553 RNF216Q9NWF9 866 aaPredicted RBP15.72■□□□□ 0.11
USP4-206ENST00000461553 ORC3Q9UBD5 711 aaPredicted RBP15.72■□□□□ 0.11
USP4-206ENST00000461553 SEPT9Q9UHD8 586 aaPredicted RBP15.72■□□□□ 0.11
USP4-206ENST00000461553 NOC2LQ9Y3T9 749 aaKnown RBP15.72■□□□□ 0.11
USP4-206ENST00000461553 ZNF862O60290 1169 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 RB1P06400 928 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 GCFC2P16383 781 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 SARSP49591 514 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 CRYBB1P53674 252 aaPredicted RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 TBC1D8BQ0IIM8 1120 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 PAN2Q504Q3 1202 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 EFCAB12Q6NXP0 572 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 LRRC71Q8N4P6 559 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 BANK1Q8NDB2 785 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 ETNPPLQ8TBG4 499 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 CLP1Q92989 425 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 GTF3C6Q969F1 213 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 MBOAT7Q96N66 472 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 SCLT1Q96NL6 688 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 NAP1L4Q99733 375 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 NSUN3Q9H649 340 aaKnown RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 UBE2ZQ9H832 354 aaPredicted RBP15.71■□□□□ 0.11
USP4-206ENST00000461553 BRMS1Q9HCU9 246 aa15.71■□□□□ 0.11
USP4-206ENST00000461553 SLC37A4O43826 429 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 LINC00271P0C7V0 271 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 BMP1P13497 986 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 BMPR1AP36894 532 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 PIK3AP1Q6ZUJ8 805 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 RTN4RL1Q86UN2 441 aaPredicted RBP15.7■□□□□ 0.1
USP4-206ENST00000461553 FAM228AQ86W67 206 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 ZNF710Q8N1W2 664 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 PLVAPQ9BX97 442 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 LMAN2LQ9H0V9 348 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 CDHR5Q9HBB8 845 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 ST3GAL5Q9UNP4 418 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 PCDHB7Q9Y5E2 793 aa15.7■□□□□ 0.1
USP4-206ENST00000461553 MRPL42Q9Y6G3 142 aaKnown RBP15.7■□□□□ 0.1
USP4-206ENST00000461553 MGEA5O60502 916 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 GPR32O75388 356 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 CTDNEP1O95476 244 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 KRT2P35908 639 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 NLRP11P59045 1033 aaKnown RBP15.69■□□□□ 0.1
USP4-206ENST00000461553 MTERF2Q49AM1 385 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 LINC01465Q8N7H1 131 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 NECAB3Q96P71 396 aaPredicted RBP15.69■□□□□ 0.1
USP4-206ENST00000461553 ADAM2Q99965 735 aa15.69■□□□□ 0.1
USP4-206ENST00000461553 CCNT1O60563 726 aaKnown RBP15.68■□□□□ 0.1
USP4-206ENST00000461553 CSPG5O95196 566 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 LARGE1O95461 756 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 MMP1P03956 469 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 KCNA5P22460 613 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 ME3Q16798 604 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 XKR3Q5GH77 459 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 TCEAL5Q5H9L2 206 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 PPP4R3AQ6IN85 833 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 B3GNT9Q6UX72 402 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 SLC24A5Q71RS6 500 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 CRIPAKQ8N1N5 446 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 NECAB1Q8N987 351 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 OXER1Q8TDS5 423 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 FAM20AQ96MK3 541 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 KCNMB3Q9NPA1 279 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 RGS18Q9NS28 235 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 GJB4Q9NTQ9 266 aa15.68■□□□□ 0.1
USP4-206ENST00000461553 GRM6O15303 877 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 MARCH6O60337 910 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 DKC1O60832 514 aaKnown RBP eCLIP15.67■□□□□ 0.1
USP4-206ENST00000461553 DTNBO60941 627 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 GATMP50440 423 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 GPC3P51654 580 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 NEK4P51957 841 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 PSMC5P62195 406 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 PPP2R5CQ13362 524 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 SPOUT1Q5T280 376 aaKnown RBP15.67■□□□□ 0.1
USP4-206ENST00000461553 NLRP7Q8WX94 980 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 P2RX5Q93086 422 aa15.67■□□□□ 0.1
USP4-206ENST00000461553 TBKBP1A7MCY6 615 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 C9IYK1 514 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 TBX3O15119 743 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 ZSCAN20P17040 1043 aaPredicted RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 EIF4BP23588 611 aaKnown RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 DNM2P50570 870 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 TRIM29Q14134 588 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 TARBP2Q15633 366 aaKnown RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 LEXMQ3ZCV2 418 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 NAALADL2Q58DX5 795 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 EP400NLQ6ZTU2 488 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 POTEDQ86YR6 584 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 NSUN7Q8NE18 718 aaKnown RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 PPP2R3CQ969Q6 453 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 PABPC5Q96DU9 382 aaKnown RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 ZNF668Q96K58 619 aaPredicted RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 JPH2Q9BR39 696 aaPredicted RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 NIFKQ9BYG3 293 aaKnown RBP15.66■□□□□ 0.1
USP4-206ENST00000461553 ADAMTS10Q9H324 1103 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 ATP6V0A4Q9HBG4 840 aa15.66■□□□□ 0.1
USP4-206ENST00000461553 TMEM161AQ9NX61 479 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms