RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CYP2C19P33261 490 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 TNFAIP1Q13829 316 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 RASA3Q14644 834 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 PPP2R5AQ15172 486 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 ODR4Q5SWX8 454 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 CCDC181Q5TID7 509 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 PCNX4Q63HM2 1172 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 RBM46Q8TBY0 533 aaKnown RBP16.48■□□□□ 0.23
LDLR-202ENST00000455727 TMEM174Q8WUU8 243 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 GCNT4Q9P109 453 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 COL20A1Q9P218 1284 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 PNMA2Q9UL42 364 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 DAAM1Q9Y4D1 1078 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 UBIAD1Q9Y5Z9 338 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 DHX15O43143 795 aaKnown RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 PALMO75781 387 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 PPP1R37O75864 691 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 P4HBP07237 508 aaKnown RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 CFAP221Q4G0U5 840 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 MEI1Q5TIA1 1274 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 HOOK2Q96ED9 719 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 TEPSINQ96N21 525 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 SLC38A10Q9HBR0 1119 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 AGPAT3Q9NRZ7 376 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 RNF216Q9NWF9 866 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 DBR1Q9UK59 544 aaKnown RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 LRRIQ3A6PVS8 624 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 NFIBO00712 420 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 NCK2O43639 380 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 GFPT2O94808 682 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 ZNF280AP59817 542 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 MAPK7Q13164 816 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 SAMD1Q6SPF0 538 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 MIER3Q7Z3K6 550 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 ZFP91Q96JP5 570 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 MED4Q9NPJ6 270 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.47■□□□□ 0.23
LDLR-202ENST00000455727 PIM2Q9P1W9 311 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 NAGPAQ9UK23 515 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 NENFQ9UMX5 172 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 FRMD4BQ9Y2L6 1034 aa16.47■□□□□ 0.23
LDLR-202ENST00000455727 FLOT1O75955 427 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 LYPLA2O95372 231 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 FERP16591 822 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 TGFB2P61812 414 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 ALCAMQ13740 583 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 IFI16Q16666 785 aaKnown RBP16.46■□□□□ 0.23
LDLR-202ENST00000455727 TKFCQ3LXA3 575 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 GLE1Q53GS7 698 aaKnown RBP16.46■□□□□ 0.23
LDLR-202ENST00000455727 VPS36Q86VN1 386 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 FMNL3Q8IVF7 1028 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 DAW1Q8N136 415 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 BANK1Q8NDB2 785 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 AGO4Q9HCK5 861 aaKnown RBP16.46■□□□□ 0.23
LDLR-202ENST00000455727 CES2O00748 559 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 CTNND1O60716 968 aaKnown RBP16.46■□□□□ 0.23
LDLR-202ENST00000455727 HIP1RO75146 1068 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 CXCR5P32302 372 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 FMO5P49326 533 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 AARSP49588 968 aaKnown RBP eCLIP16.46■□□□□ 0.23
LDLR-202ENST00000455727 PADI6Q6TGC4 694 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 TBC1D22BQ9NU19 505 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 PSD3Q9NYI0 1048 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 INTUQ9ULD6 942 aa16.46■□□□□ 0.23
LDLR-202ENST00000455727 GRID2IPA4D2P6 1211 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 ENOX2Q16206 610 aaKnown RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 ALKBH5Q6P6C2 394 aaKnown RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 FAM71BQ8TC56 605 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 SYTL5Q8TDW5 730 aaPredicted RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 JDP2Q8WYK2 163 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 EXOC4Q96A65 974 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 LRRC1Q9BTT6 524 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 PACSIN1Q9BY11 444 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 LARSQ9P2J5 1176 aaKnown RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 RGS17Q9UGC6 210 aaPredicted RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 FDX1P10109 184 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 RPS12P25398 132 aaKnown RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 STAT1P42224 750 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 MRPS9P82933 396 aaKnown RBP16.45■□□□□ 0.22
LDLR-202ENST00000455727 COG2Q14746 738 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 HSP90B2PQ58FF3 399 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 IL31RAQ8NI17 732 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 STK33Q9BYT3 514 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 IKZF4Q9H2S9 585 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 ADAM21Q9UKJ8 722 aa16.45■□□□□ 0.22
LDLR-202ENST00000455727 QARSP47897 775 aaKnown RBP16.44■□□□□ 0.22
LDLR-202ENST00000455727 POTEAQ6S8J7 498 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 AENQ8WTP8 325 aaKnown RBP16.44■□□□□ 0.22
LDLR-202ENST00000455727 PSMB7Q99436 277 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 TIPINQ9BVW5 301 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 TMEM206Q9H813 350 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 AJAP1Q9UKB5 411 aaPredicted RBP16.44■□□□□ 0.22
LDLR-202ENST00000455727 ZHX2Q9Y6X8 837 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 A0A0A6YYK5 440 aaPredicted RBP16.44■□□□□ 0.22
LDLR-202ENST00000455727 ALAS1P13196 640 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 TNFRSF8P28908 595 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 BAG6P46379 1132 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 ITGB3BPQ13352 177 aaPredicted RBP16.44■□□□□ 0.22
LDLR-202ENST00000455727 MTMR1Q13613 665 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 KSR1Q8IVT5 923 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms