RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CEP68Q76N32 757 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 WAPLQ7Z5K2 1190 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 USP33Q8TEY7 942 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ASB11Q8WXH4 323 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 DPF3Q92784 378 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 DLG3Q92796 817 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 DDX17Q92841 729 aaKnown RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 CLIP3Q96DZ5 547 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 MFSD14AQ96MC6 490 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ELF4Q99607 663 aaPredicted RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 OSBPL1AQ9BXW6 950 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 NMRK2Q9NPI5 230 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 KCNH7Q9NS40 1196 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ATG3Q9NT62 314 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 NWD2Q9ULI1 1742 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 CDC42BPGQ6DT37 1551 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 CCDC144AA2RUR9 1427 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 ABCC5O15440 1437 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 ANKRD50Q9ULJ7 1429 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 KIF1AQ12756 1690 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 MAN2B1O00754 1011 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 ESR1P03372 595 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 PROCP04070 461 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 HSPA6P17066 643 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 GPR3P46089 330 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 SLC6A11P48066 632 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 KIF11P52732 1056 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 EPHA5P54756 1037 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 TCIRG1Q13488 830 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 MORC3Q14149 939 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 PCBP2Q15366 365 aaKnown RBP eCLIP5.16□□□□□ -1.58
HMGB3-203ENST00000430118 NBPF8Q3BBV2 869 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 TSHZ1Q6ZSZ6 1077 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 EPM2AIP1Q7L775 607 aaPredicted RBP5.16□□□□□ -1.58
HMGB3-203ENST00000430118 OSTM1Q86WC4 334 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 CREG2Q8IUH2 290 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 TPH2Q8IWU9 490 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 TMEM52Q8NDY8 209 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 PJA1Q8NG27 643 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 PHOSPHO1Q8TCT1 267 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 MISP3Q96FF7 219 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 MAP6Q96JE9 813 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 MAML3Q96JK9 1138 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 KCNJ15Q99712 375 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 ZMAT4Q9H898 229 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 TOMM22Q9NS69 142 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 C1orf112Q9NSG2 853 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 H2AFY2Q9P0M6 372 aaPredicted RBP5.16□□□□□ -1.58
HMGB3-203ENST00000430118 PLAGL2Q9UPG8 496 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 INVSQ9Y283 1065 aa5.16□□□□□ -1.58
HMGB3-203ENST00000430118 NRXN3Q9Y4C0 1643 aa5.15□□□□□ -1.58
HMGB3-203ENST00000430118 PXDNQ92626 1479 aa5.15□□□□□ -1.58
HMGB3-203ENST00000430118 GOLGA8AA7E2F4 631 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 GOLGA8BA8MQT2 603 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 FADS2P1A8MWK0 482 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 DVL2O14641 736 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 KDM1AO60341 852 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 MTHFD2P13995 350 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 SLC9A1P19634 815 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 RPL10P27635 214 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 ADKP55263 362 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 PICALMQ13492 652 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 SAFB2Q14151 953 aaKnown RBP eCLIP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 FSCN1Q16658 493 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 SYCP2LQ5T4T6 812 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 ANGEL2Q5VTE6 544 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 KSR2Q6VAB6 950 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 TTLL7Q6ZT98 887 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 SLCO6A1Q86UG4 719 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 FAM43AQ8N2R8 423 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 FBXL6Q8N531 539 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 PLEKHO2Q8TD55 490 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 RUNDC1Q96C34 613 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 MPHOSPH6Q99547 160 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 MTA3Q9BTC8 594 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 JAM3Q9BX67 310 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 CSRNP2Q9H175 543 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 SPON1Q9HCB6 807 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 MAN1C1Q9NR34 630 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 ZNF277Q9NRM2 450 aaPredicted RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 TOPORSQ9NS56 1045 aaPredicted RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 CCM2LQ9NUG4 571 aaPredicted RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 LMCD1Q9NZU5 365 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 MARCH2Q9P0N8 246 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 ZC3H7BQ9UGR2 993 aaKnown RBP5.15□□□□□ -1.59
HMGB3-203ENST00000430118 KCNG1Q9UIX4 513 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 DSEQ9UL01 958 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 ATP23Q9Y6H3 246 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 BRWD3Q6RI45 1802 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 PLCH1Q4KWH8 1693 aa5.15□□□□□ -1.59
HMGB3-203ENST00000430118 PRAG1Q86YV5 1406 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 NEXMIFQ5QGS0 1516 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 TCRBV5S4A2TA0A5A2 114 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 C22orf46C9J442 243 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 IFRD1O00458 451 aaPredicted RBP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA12O60330 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 KRT37O76014 449 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 IL33O95760 270 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 ASGR2P07307 311 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms