RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 KCNMA1Q12791 1236 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 SLC18A3Q16572 532 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 SLC10A5Q5PT55 438 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 GPATCH4Q5T3I0 446 aaKnown RBP8.77□□□□□ -1.01
HPS4-205ENST00000429411 FAM178BQ8IXR5 827 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 CCDC127Q96BQ5 260 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 SCLT1Q96NL6 688 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 NUCKS1Q9H1E3 243 aaKnown RBP8.77□□□□□ -1.01
HPS4-205ENST00000429411 TSKSQ9UJT2 592 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 FRMD4BQ9Y2L6 1034 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 UTP11Q9Y3A2 253 aaKnown RBP8.77□□□□□ -1.01
HPS4-205ENST00000429411 NUP98P52948 1817 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 CARNS1A5YM72 827 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 POTEJP0CG39 1038 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 TMOD1P28289 359 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 PLTPP55058 493 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 ODR4Q5SWX8 454 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 CCDC121Q6ZUS5 278 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 ZFPM1Q8IX07 1006 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 FAM186BQ8IYM0 893 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 ELMO3Q96BJ8 720 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 CABS1Q96KC9 395 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 RNPC3Q96LT9 517 aaKnown RBP8.77□□□□□ -1.01
HPS4-205ENST00000429411 AMNQ9BXJ7 453 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 TTYH3Q9C0H2 523 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 DHX36Q9H2U1 1008 aaKnown RBP8.77□□□□□ -1.01
HPS4-205ENST00000429411 VIPAS39Q9H9C1 493 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 AMFRQ9UKV5 643 aa8.77□□□□□ -1.01
HPS4-205ENST00000429411 GOLGA6L10A0A0M3HER8 536 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 ZBTB39O15060 712 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 GAS7O60861 476 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 GNA14O95837 355 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 NR3C1P04150 777 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 UCHL3P15374 230 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 CYP11B2P19099 503 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 PPP4CP60510 307 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 PSMD2Q13200 908 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 MESDQ14696 234 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 MICALCLQ6ZW33 695 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 SAMD7Q7Z3H4 446 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 TADA2BQ86TJ2 420 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 CCDC26Q8TAB7 109 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 SCFD1Q8WVM8 642 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 LMBR1Q8WVP7 490 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 CASKIN2Q8WXE0 1202 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 MRRFQ96E11 262 aaKnown RBP8.76□□□□□ -1.01
HPS4-205ENST00000429411 TRIM51Q9BSJ1 452 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 TDRD3Q9H7E2 651 aaKnown RBP8.76□□□□□ -1.01
HPS4-205ENST00000429411 TMOD4Q9NZQ9 345 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 SHANK3Q9BYB0 1731 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 GSTTP1A0A1W2PQM5 241 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 PGRMC1O00264 195 aaKnown RBP8.76□□□□□ -1.01
HPS4-205ENST00000429411 TTI1O43156 1089 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 SART1O43290 800 aaKnown RBP8.76□□□□□ -1.01
HPS4-205ENST00000429411 SPOPO43791 374 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 GH2P01242 217 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 FXR2P51116 673 aaKnown RBP eCLIP8.76□□□□□ -1.01
HPS4-205ENST00000429411 LRRC55Q6ZSA7 311 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 CATSPER3Q86XQ3 398 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 MMGT1Q8N4V1 131 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 HOOK2Q96ED9 719 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 CALR3Q96L12 384 aaKnown RBP8.76□□□□□ -1.01
HPS4-205ENST00000429411 UBXN6Q9BZV1 441 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 TMOD2Q9NZR1 351 aa8.76□□□□□ -1.01
HPS4-205ENST00000429411 A0A1W2PQJ5 194 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 ARHGEF35A5YM69 484 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 GOLGA8IPA6NC78 632 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 GOLGA8JA6NMD2 632 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 F5H6K3 240 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 AGPSO00116 658 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 VIMP08670 466 aaKnown RBP8.75□□□□□ -1.01
HPS4-205ENST00000429411 ITGA4P13612 1032 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 KLRC3Q07444 240 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 PDIA5Q14554 519 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 KNOP1Q1ED39 458 aaKnown RBP8.75□□□□□ -1.01
HPS4-205ENST00000429411 LRCH2Q5VUJ6 765 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 BAP1Q92560 729 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 HAS1Q92839 578 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 IQCDQ96DY2 449 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 MTMR9Q96QG7 549 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 PAIP2Q9BPZ3 127 aaKnown RBP8.75□□□□□ -1.01
HPS4-205ENST00000429411 SNX24Q9Y343 169 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 NOC2LQ9Y3T9 749 aaKnown RBP8.75□□□□□ -1.01
HPS4-205ENST00000429411 NUP188Q5SRE5 1749 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 TLR2O60603 784 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 BBOX1O75936 387 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 ABCB5Q2M3G0 1257 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 ZNF571Q7Z3V5 609 aaPredicted RBP8.75□□□□□ -1.01
HPS4-205ENST00000429411 PACS2Q86VP3 889 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 RTKN2Q8IZC4 609 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 PPM1KQ8N3J5 372 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 CXorf38Q8TB03 319 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 LRRC45Q96CN5 670 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 OSGEPQ9NPF4 335 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 FBXL5Q9UKA1 691 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 DUOX1Q9NRD9 1551 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 CCDC169A6NNP5 214 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 M0R2N6 131 aa8.75□□□□□ -1.01
HPS4-205ENST00000429411 EIF3HO15372 352 aaKnown RBP eCLIP8.75□□□□□ -1.018e-6■□□□□ 10.6
HPS4-205ENST00000429411 PPP1R11O60927 126 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms