RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 EPB41L1Q9H4G0 881 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 MYOTQ9UBF9 498 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 SFMBT1Q9UHJ3 866 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 BCL9O00512 1426 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 THSD7AQ9UPZ6 1657 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 HGSO14964 777 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 SLC27A2O14975 620 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PLA2G1BP04054 148 aaKnown RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PPP2R1AP30153 589 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 SLC6A11P48066 632 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 GRIN1Q05586 938 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 RALBP1Q15311 655 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 RSPO2Q6UXX9 243 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 ETV3LQ6ZN32 361 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 LCNL1Q6ZST4 164 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 BRAPQ7Z569 592 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 JAZF1Q86VZ6 243 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 JMYQ8N9B5 988 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 SCLYQ96I15 445 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PWWP2AQ96N64 755 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 YIPF4Q9BSR8 244 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 CD244Q9BZW8 370 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 NCOA5Q9HCD5 579 aaKnown RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 COQ6Q9Y2Z9 468 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PCDHB4Q9Y5E5 795 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 OVOS2A0A0G2JMS6 1433 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 KIF20BQ96Q89 1820 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 IGSF1Q8N6C5 1336 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 IRS2Q9Y4H2 1338 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PLEKHG2Q9H7P9 1386 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PYGMP11217 842 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 GABREP78334 506 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 SMAD4Q13485 552 aaKnown RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 CNGB1Q14028 1251 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 C21orf62-AS1Q17RA5 79 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 AMOTQ4VCS5 1084 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 PLEKHO1Q53GL0 409 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 LCE3BQ5TA77 95 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 CNKSR3Q6P9H4 555 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 GIMAP6Q6P9H5 292 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 CD300LDQ6UXZ3 194 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 MAMDC2Q7Z304 686 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 C1QL4Q86Z23 238 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 CISD2Q8N5K1 135 aaKnown RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 BHLHE22Q8NFJ8 381 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-208ENST00000423463 ZSWIM3Q96MP5 696 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 NOX5Q96PH1 765 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 NUDCQ9Y266 331 aa3.27□□□□□ -1.89
VPS13A-208ENST00000423463 A0A1B0GTL3 188 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TCRBV5S2A0A599 114 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TCRBV5S4A2TA0A5A2 114 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 AQP7O14520 342 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PLSCR1O15162 318 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 C8BP07358 591 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 NCAM1P13591 858 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 YBX3P16989 372 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PFKLP17858 780 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 KRT15P19012 456 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PAK1Q13153 545 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 SLC9A5Q14940 896 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 NCAPD2Q15021 1401 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 LONRF2Q1L5Z9 754 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TKFCQ3LXA3 575 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PHF19Q5T6S3 580 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 CIAPIN1Q6FI81 312 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 OTOP3Q7RTS5 596 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZC3H7AQ8IWR0 971 aaKnown RBP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PCDH19Q8TAB3 1148 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 RNPC3Q96LT9 517 aaKnown RBP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 CLUHP3Q96NS8 147 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZFYVE21Q9BQ24 234 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 CBLCQ9ULV8 474 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TELO2Q9Y4R8 837 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 LTN1O94822 1766 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TNS2Q63HR2 1409 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 RGPD5Q99666 1765 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 FAM47E-STBD1D6RA91 191 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZSCAN22P10073 491 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PDE6AP16499 860 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 FOXO4P98177 505 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF460Q14592 562 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 TARBP2Q15633 366 aaKnown RBP3.26□□□□□ -1.89
VPS13A-208ENST00000423463 SULT6B1Q6IMI4 303 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ABHD17CQ6PCB6 329 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 IFNL2Q8IZJ0 200 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZBTB8AQ96BR9 441 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 CAMKK2Q96RR4 588 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 SLC6A20Q9NP91 592 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 CATSPERZQ9NTU4 200 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF652Q9Y2D9 606 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PCDH11XQ9BZA7 1347 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PCDH11YQ9BZA8 1340 aa3.26□□□□□ -1.89
VPS13A-208ENST00000423463 PEAK1Q9H792 1746 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 ANKRD26Q9UPS8 1709 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 PARD3Q8TEW0 1356 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 TLDC2A0PJX2 215 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 KRIT1O00522 736 aa3.25□□□□□ -1.89
VPS13A-208ENST00000423463 CYP27B1O15528 508 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms