RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF496Q96IT1 587 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 PLEKHF1Q96S99 279 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 RXFP1Q9HBX9 757 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 DDX56Q9NY93 547 aaKnown RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 KLHL42Q9P2K6 505 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 TIMM13Q9Y5L4 95 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 CCDC66A2RUB6 948 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 WTIPA6NIX2 430 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 PSPNO60542 156 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 COL6A2P12110 1019 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 DCTN1Q14203 1278 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 KIZQ2M2Z5 673 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 TAF7LQ5H9L4 462 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 CT47A1Q5JQC4 288 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 ANGEL2Q5VTE6 544 aaKnown RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 RBM12BQ8IXT5 1001 aaKnown RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 MTA3Q9BTC8 594 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 CRTAC1Q9NQ79 661 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 BABAM1Q9NWV8 329 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 CLDND1Q9NY35 253 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 KCPQ6ZWJ8 1503 aa8.02□□□□□ -1.12
USP40-202ENST00000409945 COL15A1P39059 1388 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 KIAA1324LA8MWY0 1029 aaPredicted RBP8.02□□□□□ -1.13
USP40-202ENST00000409945 NKRFO15226 690 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP40-202ENST00000409945 NPHP1O15259 732 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 IGHA1P01876 353 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 MMP10P09238 476 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 IBSPP21815 317 aaPredicted RBP8.02□□□□□ -1.13
USP40-202ENST00000409945 IL6STP40189 918 aaPredicted RBP8.02□□□□□ -1.13
USP40-202ENST00000409945 TMPOP42166 694 aaKnown RBP8.02□□□□□ -1.13
USP40-202ENST00000409945 MVKQ03426 396 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 TMEM177Q53S58 311 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 OVCH1Q7RTY7 1134 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 PPM1KQ8N3J5 372 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 FLCNQ8NFG4 579 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 MISP3Q96FF7 219 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 WNK4Q96J92 1243 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 CHMP4AQ9BY43 222 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 TRIM8Q9BZR9 551 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 TSPYL4Q9UJ04 414 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 ZNF652Q9Y2D9 606 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 TJP1Q07157 1748 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 UBR2Q8IWV8 1755 aa8.02□□□□□ -1.13
USP40-202ENST00000409945 FUCA1P04066 466 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 CENPBP07199 599 aaPredicted RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 PDE6AP16499 860 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 SDHBP21912 280 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 SOX5P35711 763 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 MECP2P51608 486 aaKnown RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 LSAMPQ13449 338 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 INTS5Q6P9B9 1019 aaKnown RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 OSTM1Q86WC4 334 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 CCDC146Q8IYE0 955 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 COG1Q8WTW3 980 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 NARFQ9UHQ1 456 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 ZBTB1Q9Y2K1 713 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 SIPA1L3O60292 1781 aaPredicted RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 SOS1Q07889 1333 aaPredicted RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 USP42Q9H9J4 1324 aaKnown RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 COL24A1Q17RW2 1714 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 CBX4O00257 560 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 WNT9AO14904 365 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 AMY2AP04746 511 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 GYS1P13807 737 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 AMY2BP19961 511 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 DSG1Q02413 1049 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 CREB3L3Q68CJ9 461 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 IQCEQ6IPM2 695 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 RAVER1Q8IY67 606 aaKnown RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 ALG1Q9BT22 464 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 SMURF1Q9HCE7 757 aa8.01□□□□□ -1.13
USP40-202ENST00000409945 MBNL3Q9NUK0 354 aaKnown RBP8.01□□□□□ -1.13
USP40-202ENST00000409945 DLG5Q8TDM6 1919 aa8□□□□□ -1.13
USP40-202ENST00000409945 C22orf46C9J442 243 aa8□□□□□ -1.13
USP40-202ENST00000409945 FUT4P22083 530 aa8□□□□□ -1.13
USP40-202ENST00000409945 GRIK1P39086 918 aa8□□□□□ -1.13
USP40-202ENST00000409945 ADCYAP1R1P41586 468 aa8□□□□□ -1.13
USP40-202ENST00000409945 JAM2P57087 298 aa8□□□□□ -1.13
USP40-202ENST00000409945 RPL11P62913 178 aaKnown RBP8□□□□□ -1.13
USP40-202ENST00000409945 Q8N1Y9 231 aa8□□□□□ -1.13
USP40-202ENST00000409945 SH3RF2Q8TEC5 729 aa8□□□□□ -1.13
USP40-202ENST00000409945 CELF4Q9BZC1 486 aaKnown RBP8□□□□□ -1.13
USP40-202ENST00000409945 LMCD1Q9NZU5 365 aa8□□□□□ -1.13
USP40-202ENST00000409945 TNFRSF10DQ9UBN6 386 aa8□□□□□ -1.13
USP40-202ENST00000409945 SIT1Q9Y3P8 196 aa8□□□□□ -1.13
USP40-202ENST00000409945 KATNA1O75449 491 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 TGFB2P61812 414 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 STAT4Q14765 748 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 HLA-DQA1Q5Y7H0 255 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 DDX46Q7L014 1031 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 SIRT2Q8IXJ6 389 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 SHISA4Q96DD7 197 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 TMEM169Q96HH4 297 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 LAS1LQ9Y4W2 734 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 MYH14Q7Z406 1995 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 TRBV23OR9-2A0A075B6M9 112 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 RNASE1P07998 156 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 EIF5P55010 431 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 SEC23AQ15436 765 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 PLEKHG6Q3KR16 790 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms