RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PCYOX1LQ8NBM8 494 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 SYMPKQ92797 1274 aaKnown RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 SMYD2Q9NRG4 433 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 RAPGEF3O95398 923 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 CYB5D1Q6P9G0 228 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 ATP6V1E2Q96A05 226 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 PHF21AQ96BD5 680 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 LZTS1Q9Y250 596 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 KANSL1LA0AUZ9 987 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 TUBA3CQ13748 450 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 LMBR1LQ6UX01 489 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 MPRIPQ6WCQ1 1025 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 C16orf71Q8IYS4 520 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 PLIN2Q99541 437 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 MAGEB5Q9BZ81 275 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 NLRP9Q7RTR0 991 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 LARP4BQ92615 738 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 CYFIP2Q96F07 1278 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 RANBP17Q9H2T7 1088 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 PRDM1O75626 825 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 MYBL1P10243 752 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 TFCP2Q12800 502 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 FBXW10Q5XX13 1052 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 WNT8AQ9H1J5 351 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 SCN3BQ9NY72 215 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 SF3A3Q12874 501 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 SIRT1Q96EB6 747 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 CLEC4MQ9H2X3 399 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 NCOA5Q9HCD5 579 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 HPS5Q9UPZ3 1129 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 B4E1Z4 1266 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 LPXNO60711 386 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 S100A1P23297 94 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 PTPREP23469 700 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 KRT76Q01546 638 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 EPS8Q12929 822 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 FLCNQ8NFG4 579 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 PPP1R14BQ96C90 147 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 SEC16BQ96JE7 1060 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 PRG3Q9Y2Y8 225 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 NR2F2P24468 414 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 HP1BP3Q5SSJ5 553 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 AHCYL1O43865 530 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 GAS7O60861 476 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 HMOX2P30519 316 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 AKNAD1Q5T1N1 836 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 UBN1Q9NPG3 1134 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 RABGEF1Q9UJ41 708 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 A0A1W2PQC6 194 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 TYW5A2RUC4 315 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 H2AFYO75367 372 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 CLK1P49759 484 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 HDLBPQ00341 1268 aaKnown RBP13.73□□□□□ -0.21
COL6A3-206ENST00000409809 JADE3Q92613 823 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 ZBTB10Q96DT7 871 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 PPP1R2P1Q96PQ5 205 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 CCDC90BQ9GZT6 254 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 ADAM30Q9UKF2 790 aa13.73□□□□□ -0.21
COL6A3-206ENST00000409809 KRT87PA6NCN2 255 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 MBD4O95243 580 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 BNC1Q01954 994 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 LRRC39Q96DD0 335 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 PCDHA5Q9Y5H7 936 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 EMILIN1Q9Y6C2 1016 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 FAM47DPA6NHR8 397 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ZMYND10O75800 440 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ATP2B4P23634 1241 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 MESDQ14696 234 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 CNBD1Q8NA66 436 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 APBB2Q92870 758 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ADA2Q9NZK5 511 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 TRIM49P0CI25 452 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 TRIM49CP0CI26 452 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 EIF4A3P38919 411 aaKnown RBP13.72□□□□□ -0.21
COL6A3-206ENST00000409809 SLCO1A2P46721 670 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 CDH24Q86UP0 819 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 OMA1Q96E52 524 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 EPAS1Q99814 870 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 SLC40A1Q9NP59 571 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 PCDHA12Q9UN75 941 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ARHGEF37A1IGU5 675 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ATP8B4Q8TF62 1192 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 STAP2Q9UGK3 403 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 TTLL3Q9Y4R7 772 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 GFPT2O94808 682 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 FCGR1AP12314 374 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 SURF1Q15526 300 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 XAGE3Q8WTP9 111 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 OSBPL8Q9BZF1 889 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 EYA2O00167 538 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 CCDC28BQ9BUN5 200 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 LGALS16A8MUM7 142 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 OATP04181 439 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 BRAFP15056 766 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ARL4AP40617 200 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 PPP4R4Q6NUP7 873 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 ZHX2Q9Y6X8 837 aa13.72□□□□□ -0.21
COL6A3-206ENST00000409809 SNTNA6NMZ2 147 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 C6orf229H3BNL8 230 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms