RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ADAM7Q9H2U9 754 aa20.08■□□□□ 0.8
CCDC3-201ENST00000378825 BCS1LQ9Y276 419 aa20.08■□□□□ 0.8
CCDC3-201ENST00000378825 PICALMQ13492 652 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 EPHA7Q15375 998 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 ERMARDQ5T6L9 678 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 HIBCHQ6NVY1 386 aaPredicted RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 SLC30A10Q6XR72 485 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 KCTD1Q719H9 257 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 PALB2Q86YC2 1186 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 RNF25Q96BH1 459 aaPredicted RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 TLCD1Q96CP7 247 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 LRRC27Q9C0I9 530 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 CHORDC1Q9UHD1 332 aaPredicted RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 NENFQ9UMX5 172 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 SNX24Q9Y343 169 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 UTP11Q9Y3A2 253 aaKnown RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 SFI1A8K8P3 1242 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 USP17L10C9JJH3 530 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 LDHCP07864 332 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 SLCO1A2P46721 670 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 PSEN1P49768 467 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 PLTPP55058 493 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 ORC2Q13416 577 aaPredicted RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 EIF1ADQ8N9N8 165 aaKnown RBP20.07■□□□□ 0.8
CCDC3-201ENST00000378825 CHMP6Q96FZ7 201 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 HES6Q96HZ4 224 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 TAS2R14Q9NYV8 317 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 TMOD4Q9NZQ9 345 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 GCNT4Q9P109 453 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 POLLQ9UGP5 575 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 GGA1Q9UJY5 639 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 PCDHB13Q9Y5F0 798 aa20.07■□□□□ 0.8
CCDC3-201ENST00000378825 C6orf229H3BNL8 230 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 RIMBP2O15034 1052 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 FLOT1O75955 427 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 TAL1P17542 331 aaPredicted RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 NF2P35240 595 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 IFNAR2P48551 515 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 SLC12A3P55017 1021 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 MTMR3Q13615 1198 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 FOXR2Q6PJQ5 311 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 ARHGEF26Q96DR7 871 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 SUCLA2Q9P2R7 463 aaPredicted RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 CCDC188H7C350 402 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 MMEP08473 750 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 XRCC5P13010 732 aaKnown RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 PPP1R7Q15435 360 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 DPP8Q6V1X1 898 aaPredicted RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 ZC3H3Q8IXZ2 948 aaKnown RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 SLC35G2Q8TBE7 412 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 SEC14L1Q92503 715 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 ZNF317Q96PQ6 595 aaPredicted RBP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 REEP2Q9BRK0 252 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 TXLNGYQ9BZA5 131 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 MTMR4Q9NYA4 1195 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.06■□□□□ 0.8
CCDC3-201ENST00000378825 BAIAP2L1Q9UHR4 511 aa20.06■□□□□ 0.8
CCDC3-201ENST00000378825 CDK5RAP2Q96SN8 1893 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 RAD21O60216 631 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 SERPINB2P05120 415 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 CLK2P49760 499 aaKnown RBP20.05■□□□□ 0.8
CCDC3-201ENST00000378825 ELF3P78545 371 aaPredicted RBP20.05■□□□□ 0.8
CCDC3-201ENST00000378825 XRCC4Q13426 336 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 CCDC38Q502W7 563 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 LRRC34Q8IZ02 419 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 CCDC26Q8TAB7 109 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 FBXO25Q8TCJ0 367 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 FAM129AQ9BZQ8 928 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 DHX36Q9H2U1 1008 aaKnown RBP20.05■□□□□ 0.8
CCDC3-201ENST00000378825 SLITRK6Q9H5Y7 841 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 ZDHHC18Q9NUE0 388 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 DONSONQ9NYP3 566 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 ZNF831Q5JPB2 1677 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 SBF2Q86WG5 1849 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 RHBDL3P58872 404 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 LACTB2Q53H82 288 aaPredicted RBP20.05■□□□□ 0.8
CCDC3-201ENST00000378825 FAM133BQ5BKY9 247 aaKnown RBP20.05■□□□□ 0.8
CCDC3-201ENST00000378825 KSR1Q8IVT5 923 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 TCP11Q8WWU5 503 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 ALG3Q92685 438 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 AZI2Q9H6S1 392 aa20.05■□□□□ 0.8
CCDC3-201ENST00000378825 DDX3YO15523 660 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 PPIP5K2O43314 1243 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 EVI5O60447 810 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 PPFIA2O75334 1257 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 TRIM37O94972 964 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 GYS1P13807 737 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 JAM2P57087 298 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 GIT2Q14161 759 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 CATSPER3Q86XQ3 398 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 SLC35C1Q96A29 364 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 P2RX7Q99572 595 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 ATAD5Q96QE3 1844 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 ARFGEF1Q9Y6D6 1849 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 PRKCIP41743 596 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 CYP4A11Q02928 519 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 SEPT2Q15019 361 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 LLGL1Q15334 1064 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 IFI16Q16666 785 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms