RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PPP6R3Q5H9R7 873 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-203ENST00000361654 ANKS3Q6ZW76 656 aa11.74□□□□□ -0.53
CLIP1-203ENST00000361654 TMTC3Q6ZXV5 915 aa11.74□□□□□ -0.53
CLIP1-203ENST00000361654 DDX53Q86TM3 631 aaKnown RBP11.74□□□□□ -0.53
CLIP1-203ENST00000361654 TNIP3Q96KP6 325 aa11.74□□□□□ -0.53
CLIP1-203ENST00000361654 SRPRBQ9Y5M8 271 aaKnown RBP11.74□□□□□ -0.53
CLIP1-203ENST00000361654 USP6P35125 1406 aa11.74□□□□□ -0.53
CLIP1-203ENST00000361654 DNAJC8O75937 253 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 BAG2O95816 211 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 C6orf222P0C671 652 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 TXNP10599 105 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 RARBP10826 455 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SDC4P31431 198 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SNAP25P60880 206 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SCRN1Q12765 414 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 EIF2B5Q13144 721 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 TEX2Q8IWB9 1127 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 XXYLT1Q8NBI6 393 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 MINPP1Q9UNW1 487 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 TADA2AO75478 443 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 BRD1O95696 1058 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SERPINB6P35237 376 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 QARSP47897 775 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 ARHGDIAP52565 204 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SNX17Q15036 470 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 CHAMP1Q96JM3 812 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 TJP2Q9UDY2 1190 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 STAP2Q9UGK3 403 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 CLIC4Q9Y696 253 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SAMD9Q5K651 1589 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 CEP170Q5SW79 1584 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 EFNA5P52803 228 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PSMC5P62195 406 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PRKCQQ04759 706 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 COG2Q14746 738 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 KRT39Q6A163 491 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SLC16A10Q8TF71 515 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 POLR3EQ9NVU0 708 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PGRMC1O00264 195 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 MYO1DO94832 1006 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SH3BGRP55822 239 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 KRT17Q04695 432 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 SWSAP1Q6NVH7 229 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 HAUS6Q7Z4H7 955 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 UHMK1Q8TAS1 419 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 CTTNBP2Q8WZ74 1663 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PI4K2BG5E9Z4 385 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 RASGRF2O14827 1237 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 CYP27A1Q02318 531 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PDCD2Q16342 344 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 EFHC2Q5JST6 749 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 ITPRIPL1Q6GPH6 555 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 ANKRD13CQ8N6S4 541 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 HSPH1Q92598 858 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PPWD1Q96BP3 646 aaKnown RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 PBKQ96KB5 322 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 RPAP3Q9H6T3 665 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-203ENST00000361654 GABBR1Q9UBS5 961 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 RNF14Q9UBS8 474 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 TEKT2Q9UIF3 430 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 MROH7-TTC4A0A0A0MT08 1334 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 ATP7BP35670 1465 aa11.73□□□□□ -0.53
CLIP1-203ENST00000361654 E5RI56 91 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 TJP3O95049 919 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 SNX1Q13596 522 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ATG16L1Q676U5 607 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 SPATA2LQ8IUW3 424 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 RHOT2Q8IXI1 618 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 FIS1Q9Y3D6 152 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 HIP1RO75146 1068 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 CD2BP2O95400 341 aaKnown RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 NDUFA8P51970 172 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 FCGRTP55899 365 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 OCRLQ01968 901 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 GLE1Q53GS7 698 aaKnown RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 THEMIS2Q5TEJ8 643 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 RBM41Q96IZ5 413 aaKnown RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ADAM22Q9P0K1 906 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 PPP2R2CQ9Y2T4 447 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 OCM2P0CE71 109 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 OCMP0CE72 109 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 PLCG1P19174 1290 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 NSUN2Q08J23 767 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 MUM1Q2TAK8 710 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 DCUN1D1Q96GG9 259 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 NEUROG2Q9H2A3 272 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 THAP9Q9H5L6 903 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ZWILCHQ9H900 591 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ZSWIM5Q9P217 1185 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 PCDHA5Q9Y5H7 936 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ZC3H4Q9UPT8 1303 aaKnown RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 A8MXQ7 604 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 NBPF26B4DH59 902 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 HMGCS2P54868 508 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 ADCY1Q08828 1119 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 BBS9Q3SYG4 887 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 RNF180Q86T96 592 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 CALR3Q96L12 384 aaKnown RBP11.72□□□□□ -0.53
CLIP1-203ENST00000361654 FOPNLQ96NB1 174 aa11.72□□□□□ -0.53
CLIP1-203ENST00000361654 OLFML3Q9NRN5 406 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms