RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ARHGEF35A5YM69 484 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 KIAA0355O15063 1070 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 USO1O60763 962 aaKnown RBP24.68■■□□□ 1.54
SHMT1-203ENST00000354098 CMA1P23946 247 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 THPOP40225 353 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 NAALADL2Q58DX5 795 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 PADI6Q6TGC4 694 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 SLC7A3Q8WY07 619 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 XPNPEP1Q9NQW7 623 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 PPME1Q9Y570 386 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 ARID2Q68CP9 1835 aa24.68■■□□□ 1.54
SHMT1-203ENST00000354098 CYP2C18P33260 490 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 RFC5P40937 340 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 TMEM62Q0P6H9 643 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 EMC2Q15006 297 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 KCTD17Q8N5Z5 321 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 RETREG2Q8NC44 543 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 FAM13BQ9NYF5 915 aa24.67■■□□□ 1.54
SHMT1-203ENST00000354098 DGAT1O75907 488 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 SSBP05455 408 aaKnown RBP eCLIP24.66■■□□□ 1.54
SHMT1-203ENST00000354098 PLA2G4BP0C869 781 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 CKBP12277 381 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 DHX8Q14562 1220 aaKnown RBP24.66■■□□□ 1.54
SHMT1-203ENST00000354098 MAEAQ7L5Y9 396 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 RAD54LQ92698 747 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 TMEM143Q96AN5 459 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 TNRC18O15417 2968 aaPredicted RBP24.66■■□□□ 1.54
SHMT1-203ENST00000354098 A0A1W2PQ27 194 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 A0A1W2PQ64 194 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 A0A1W2PQD8 194 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 SLC12A3P55017 1021 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 MCM6Q14566 821 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 ZNF618Q5T7W0 954 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 CCDC73Q6ZRK6 1079 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 SYT2Q8N9I0 419 aaPredicted RBP24.66■■□□□ 1.54
SHMT1-203ENST00000354098 CAGE1Q8TC20 777 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 RUSC1Q9BVN2 902 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 POLD4Q9HCU8 107 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 PRKAG2Q9UGJ0 569 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 KCNH3Q9ULD8 1083 aa24.66■■□□□ 1.54
SHMT1-203ENST00000354098 TIMP1P01033 207 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 VTNP04004 478 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 CTSHP09668 335 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 RAG1P15918 1043 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 PFKFB1P16118 471 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 STAT6P42226 847 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 CCL23P55773 120 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 MLLT1Q03111 559 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-203ENST00000354098 BFSP2Q13515 415 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 E2F4Q16254 413 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 CLEC17AQ6ZS10 378 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 RPAINQ86UA6 219 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 LARP4BQ92615 738 aaKnown RBP24.65■■□□□ 1.54
SHMT1-203ENST00000354098 PPP1R16BQ96T49 567 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 MTRQ99707 1265 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 WNT8AQ9H1J5 351 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 GOLPH3LQ9H4A5 285 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 ATP6V0A4Q9HBG4 840 aa24.65■■□□□ 1.54
SHMT1-203ENST00000354098 PITPNM1O00562 1244 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 POLR2DO15514 142 aaKnown RBP24.64■■□□□ 1.53
SHMT1-203ENST00000354098 TMOD1P28289 359 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 RBL2Q08999 1139 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 RINT1Q6NUQ1 792 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 TRAF7Q6Q0C0 670 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 CCDC155Q8N6L0 562 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 FSIP1Q8NA03 581 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 DHX58Q96C10 678 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 JPH2Q9BR39 696 aaPredicted RBP24.64■■□□□ 1.53
SHMT1-203ENST00000354098 GPRC5CQ9NQ84 441 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 STK17AQ9UEE5 414 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 AKT3Q9Y243 479 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 HPSEQ9Y251 543 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 NR2E3Q9Y5X4 410 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 EVPLQ92817 2033 aa24.64■■□□□ 1.53
SHMT1-203ENST00000354098 GADD45BO75293 160 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-203ENST00000354098 CYP11B2P19099 503 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 NDUFA8P51970 172 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 C1orf186Q6ZWK4 172 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 RSPH3Q86UC2 560 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 EXOC8Q8IYI6 725 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 SCLYQ96I15 445 aa24.63■■□□□ 1.53
SHMT1-203ENST00000354098 ZNF668Q96K58 619 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-203ENST00000354098 SUCLA2Q9P2R7 463 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-203ENST00000354098 GOLGA6L4A6NEF3 574 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 CHRNA1P02708 482 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 SELPP16109 830 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 DNM2P50570 870 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 CSPP1Q1MSJ5 1256 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 ARSHQ5FYA8 562 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 NME8Q8N427 588 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 TMEM87AQ8NBN3 555 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 MRPS27Q92552 414 aaKnown RBP24.62■■□□□ 1.53
SHMT1-203ENST00000354098 MAP7D2Q96T17 732 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 OSBPL7Q9BZF2 842 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 FAM237AA0A1B0GTK4 181 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 IQCF3P0C7M6 154 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 MRPS6P82932 125 aaKnown RBP24.62■■□□□ 1.53
SHMT1-203ENST00000354098 RAD51AP2Q09MP3 1159 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 LRRC8DQ7L1W4 858 aa24.62■■□□□ 1.53
SHMT1-203ENST00000354098 KSR1Q8IVT5 923 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms