RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SEL1LQ9UBV2 794 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 LOXHD1Q8IVV2 1947 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 GGCXP38435 758 aa23.8■■□□□ 1.4
SHMT1-202ENST00000352886 NFIL3Q16649 462 aa23.8■■□□□ 1.4
SHMT1-202ENST00000352886 ODR4Q5SWX8 454 aa23.8■■□□□ 1.4
SHMT1-202ENST00000352886 SND1Q7KZF4 910 aaKnown RBP eCLIP23.8■■□□□ 1.4
SHMT1-202ENST00000352886 BANK1Q8NDB2 785 aa23.8■■□□□ 1.4
SHMT1-202ENST00000352886 ODF2LQ9ULJ1 636 aa23.8■■□□□ 1.4
SHMT1-202ENST00000352886 DDX39AO00148 427 aaKnown RBP23.79■■□□□ 1.4
SHMT1-202ENST00000352886 FLOT1O75955 427 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 B3GNT9Q6UX72 402 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 HS2ST1Q7LGA3 356 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 AGBL1Q96MI9 1066 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 PSMD1Q99460 953 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 KCND2Q9NZV8 630 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 GLE1Q53GS7 698 aaKnown RBP23.79■■□□□ 1.4
SHMT1-202ENST00000352886 FKBP1CQ5VVH2 108 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 STXBP4Q6ZWJ1 553 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 INPP4AQ96PE3 977 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-202ENST00000352886 MXRA8Q9BRK3 442 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 MKNK1Q9BUB5 465 aa23.79■■□□□ 1.4
SHMT1-202ENST00000352886 UBE4BO95155 1302 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 AGPSO00116 658 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 CYP2J2P51589 502 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 GRIPAP1Q4V328 841 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 AGPAT3Q9NRZ7 376 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 STK32BQ9NY57 414 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 CCPG1Q9ULG6 757 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 CAPN2P17655 700 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 ITGB5P18084 799 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 NOP2P46087 812 aaKnown RBP23.78■■□□□ 1.4
SHMT1-202ENST00000352886 VPS36Q86VN1 386 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 PKD2L1Q9P0L9 805 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 FRMD4BQ9Y2L6 1034 aa23.78■■□□□ 1.4
SHMT1-202ENST00000352886 ARHGEF35A5YM69 484 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 GOLGA6BA6NDN3 693 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 GFPT2O94808 682 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 FMO5P49326 533 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 EPHB4P54760 987 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 RNASE9P60153 205 aaKnown RBP23.77■■□□□ 1.4
SHMT1-202ENST00000352886 FAM83AQ86UY5 434 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 RIT2Q99578 217 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 GOLPH3Q9H4A6 298 aa23.77■■□□□ 1.4
SHMT1-202ENST00000352886 ASNSP08243 561 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 INPP5BP32019 993 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 HSD17B4P51659 736 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 ZSCAN26Q16670 478 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 NENFQ9UMX5 172 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 HIP1RO75146 1068 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 ICAM1P05362 532 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 GUCY2CP25092 1073 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 ANXA13P27216 316 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 TNFRSF8P28908 595 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 PTGER2P43116 358 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 RPS6KA1Q15418 735 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 IFI16Q16666 785 aaKnown RBP23.76■■□□□ 1.39
SHMT1-202ENST00000352886 TAF4BQ92750 862 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 COL20A1Q9P218 1284 aa23.76■■□□□ 1.39
SHMT1-202ENST00000352886 GLI1P08151 1106 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 FERP16591 822 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 STAT1P42224 750 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 EN1Q05925 392 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-202ENST00000352886 EMBQ6PCB8 327 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 GOLGA6L1Q8N7Z2 621 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 ZNF341Q9BYN7 854 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 PDGFDQ9GZP0 370 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-202ENST00000352886 DMAC2Q9NW81 257 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 ZNF536O15090 1300 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 DDX3XO00571 662 aaKnown RBP eCLIP23.75■■□□□ 1.392e-14■■■■□ 24.5
SHMT1-202ENST00000352886 NFIBO00712 420 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 KCNK3O14649 394 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 CBWD6Q4V339 395 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 CBWD3Q5JTY5 395 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 CBWD5Q5RIA9 395 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 LRRC57Q8N9N7 239 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 DEFB129Q9H1M3 183 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 KCNH7Q9NS40 1196 aa23.75■■□□□ 1.39
SHMT1-202ENST00000352886 EVI5O60447 810 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 TRIM49P0CI25 452 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 TRIM49CP0CI26 452 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 RXRBP28702 533 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 ACTN2P35609 894 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 MAPK7Q13164 816 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 PLS1Q14651 629 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 MIER3Q7Z3K6 550 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 DAW1Q8N136 415 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 AFAP1L1Q8TED9 768 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 KRT12Q99456 494 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 PLEKHA4Q9H4M7 779 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 SCAF8Q9UPN6 1271 aaKnown RBP23.74■■□□□ 1.39
SHMT1-202ENST00000352886 F8VZ95 297 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 HEXIM1O94992 359 aaKnown RBP23.74■■□□□ 1.39
SHMT1-202ENST00000352886 KIF4AO95239 1232 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 PTPROQ16827 1216 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 MAEAQ7L5Y9 396 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 SYCP3Q8IZU3 236 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 MTMR14Q8NCE2 650 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 IL31RAQ8NI17 732 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 GOLGA5Q8TBA6 731 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 HOOK2Q96ED9 719 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms