RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZMYND8Q9ULU4 1186 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 MTMR7Q9Y216 660 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 SPDYE2BA6NHP3 402 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 SPDYE5A6NIY4 337 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 TCP11X1B4DZS4 312 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 KIAA0391O15091 583 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 DDX3YO15523 660 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 EDIL3O43854 480 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 AHCYL1O43865 530 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 GJB6O95452 261 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 SPDYE6P0CI01 402 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 CREB1P16220 341 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 GNAZP19086 355 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 FGFR4P22455 802 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 DR1Q01658 176 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 CHRNDQ07001 517 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 AUHQ13825 339 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 RBBP5Q15291 538 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 SPDYE2Q495Y8 402 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 CGB2Q6NT52 195 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 FAM43BQ6ZT52 329 aaPredicted RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 JAMLQ86YT9 394 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 TBCKQ8TEA7 893 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 CRAMP1Q96RY5 1269 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 OSGEPQ9NPF4 335 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 PPP1R9AQ9ULJ8 1098 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 SSUH2Q9Y2M2 353 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 RTCBQ9Y3I0 505 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 FOXO6A8MYZ6 492 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 DDX3XO00571 662 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS39-202ENST00000348544 HGSO14964 777 aaPredicted RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 SLC37A4O43826 429 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 LUC7L3O95232 432 aaKnown RBP7.36□□□□□ -1.23
VPS39-202ENST00000348544 GOLGA8HP0CJ92 632 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 UCHL3P15374 230 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 RPS6KA3P51812 740 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 KCNH2Q12809 1159 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 PSMD2Q13200 908 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 TRIM68Q6AZZ1 485 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 KRT25Q7Z3Z0 450 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 EXOC3L1Q86VI1 746 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 ZNF34Q8IZ26 560 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 SLC17A8Q8NDX2 589 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 MGARPQ8TDB4 240 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 CEP63Q96MT8 703 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 SLC4A9Q96Q91 983 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 PIDD1Q9HB75 910 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 TMEM260Q9NX78 707 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 PRKAG3Q9UGI9 489 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 ZBTB1Q9Y2K1 713 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 DAAM1Q9Y4D1 1078 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 IGSF9BQ9UPX0 1349 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 BCL9O00512 1426 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 KIF13BQ9NQT8 1826 aa7.36□□□□□ -1.23
VPS39-202ENST00000348544 A0A0A6YYK5 440 aaPredicted RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 FAM170AA1A519 330 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 USP17L3A6NCW0 530 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 USP17L4A6NCW7 530 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 STARD3NLO95772 234 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 H2AFZP0C0S5 128 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 CCNB1P14635 433 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 GM2AP17900 193 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 PRKCIP41743 596 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 PTGIRP43119 386 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 RPL21P46778 160 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 NAPAP54920 295 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 TFAP4Q01664 338 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 ZNF211Q13398 564 aaPredicted RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 SEPT2Q15019 361 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 GNPTABQ3T906 1256 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 TMEM119Q4V9L6 283 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 KIAA1755Q5JYT7 1200 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 FAM26FQ5R3K3 315 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 C6orf118Q5T5N4 469 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 CWF19L1Q69YN2 538 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 AADACL2Q6P093 401 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SLC30A9Q6PML9 568 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 BARGINQ6ZT62 677 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 H2AFVQ71UI9 128 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 USP17L1Q7RTZ2 530 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 TMEM109Q9BVC6 243 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 CCDC113Q9H0I3 377 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 KCTD10Q9H3F6 313 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 MLXIPLQ9NP71 852 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 PCDHA2Q9Y5H9 948 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SMCO2A6NFE2 343 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 MPHOSPH10O00566 681 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 RIPK2O43353 540 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 WFS1O76024 890 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SUN1O94901 812 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 TDP2O95551 362 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 GNAT1P11488 350 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 FXR2P51116 673 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS39-202ENST00000348544 LACTBP83111 547 aaPredicted RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 RNASELQ05823 741 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 PRPF4BQ13523 1007 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 MPP2Q14168 576 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 DIXDC1Q155Q3 683 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SUSD4Q5VX71 490 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 NUGGCQ68CJ6 796 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms