RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CNTN2Q02246 1040 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 NELFCDQ8IXH7 590 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 MYCT1Q8N699 235 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 ZNF507Q8TCN5 953 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 MPHOSPH6Q99547 160 aaKnown RBP14.09□□□□□ -0.15
CLK3-201ENST00000345005 NOC4LQ9BVI4 516 aaKnown RBP14.09□□□□□ -0.15
CLK3-201ENST00000345005 FGFBP2Q9BYJ0 223 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 KCTD10Q9H3F6 313 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 NMRK2Q9NPI5 230 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 ST7Q9NRC1 585 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 ARID2Q68CP9 1835 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 TRPM7Q96QT4 1865 aa14.09□□□□□ -0.15
CLK3-201ENST00000345005 PES1O00541 588 aaKnown RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 EIF3DO15371 548 aaKnown RBP eCLIP14.08□□□□□ -0.15
CLK3-201ENST00000345005 GNA14O95837 355 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 CHRM1P11229 460 aaPredicted RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 FECHP22830 423 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 GTF2A2P52657 109 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 ZNF131P52739 623 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 RBL2Q08999 1139 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 KNOP1Q1ED39 458 aaKnown RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 BMT2Q1RMZ1 405 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 EDRF1Q3B7T1 1238 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 PADI6Q6TGC4 694 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 LRRC55Q6ZSA7 311 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 STXBP4Q6ZWJ1 553 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 C2orf69Q8N8R5 385 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 CCDC43Q96MW1 224 aaKnown RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 MROH8Q9H579 483 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 GBA2Q9HCG7 927 aaPredicted RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 JPH1Q9HDC5 661 aaPredicted RBP14.08□□□□□ -0.15
CLK3-201ENST00000345005 ANKEF1Q9NU02 776 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 SLC9A2Q9UBY0 812 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 SLC45A1Q9Y2W3 748 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 ADGRG1Q9Y653 693 aa14.08□□□□□ -0.15
CLK3-201ENST00000345005 PDXKO00764 312 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 PSAPP07602 524 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 YWHABP31946 246 aaKnown RBP14.08□□□□□ -0.16
CLK3-201ENST00000345005 RARRES1P49788 294 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 ADKP55263 362 aaKnown RBP14.08□□□□□ -0.16
CLK3-201ENST00000345005 TBC1D8BQ0IIM8 1120 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 LEKR1Q6ZMV7 388 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 TOGARAM2Q6ZUX3 1019 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 FAM133AQ8N9E0 248 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 SHCBP1Q8NEM2 672 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 EEF2KMTQ96G04 330 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 TIPINQ9BVW5 301 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 TXNRD2Q9NNW7 524 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 TRAF3IP3Q9Y228 551 aa14.08□□□□□ -0.16
CLK3-201ENST00000345005 LRRC37A2A6NM11 1700 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 UBE4BO95155 1302 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 SOWAHBA6NEL2 793 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 SFI1A8K8P3 1242 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 CALUO43852 315 aaPredicted RBP14.07□□□□□ -0.16
CLK3-201ENST00000345005 GCNT3O95395 438 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 EDNRBP24530 442 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 CASP5P51878 434 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 MAN2A1Q16706 1144 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 Q3C1V9 767 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 FKBP15Q5T1M5 1219 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 OTUD6AQ7L8S5 288 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 ZC3H3Q8IXZ2 948 aaKnown RBP14.07□□□□□ -0.16
CLK3-201ENST00000345005 ATP6V0A1Q93050 837 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 PLXNA1Q9UIW2 1896 aa14.07□□□□□ -0.16
CLK3-201ENST00000345005 ASTN1O14525 1302 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 CETN3O15182 167 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 RPS6KA5O75582 802 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 SASH3O75995 380 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 PRPF6O94906 941 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 SEC31AO94979 1220 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 MYBP10242 640 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ERVK-9P63128 1117 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ERVK-24P63145 666 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 GOLGA8FQ08AF8 430 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 GOLGA8DPQ0D2H9 430 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ADAM9Q13443 819 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 KCTD2Q14681 263 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ZSCAN26Q16670 478 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 UGCGQ16739 394 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 VWA3BQ502W6 1294 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 HSP90B2PQ58FF3 399 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MIIPQ5JXC2 388 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 FAM178BQ8IXR5 827 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 CPLX3Q8WVH0 158 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MMP19Q99542 508 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 NUP58Q9BVL2 599 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MED4Q9NPJ6 270 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 TYW1Q9NV66 732 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 ADAM21Q9UKJ8 722 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 PCDHB13Q9Y5F0 798 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MCM3APO60318 1980 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 FANCGO15287 622 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MFAP3LO75121 409 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 HIP1RO75146 1068 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 GYPCP04921 128 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 TGFB3P10600 412 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MAPTP10636 758 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 RPL13P26373 211 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 CASP14P31944 242 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 HOXD13P35453 343 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms