RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 KRT26Q7Z3Y9 468 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 KLHL7Q8IXQ5 586 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 TMTC2Q8N394 836 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 PPFIBP2Q8ND30 876 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 ATP8B4Q8TF62 1192 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 OSBP2Q969R2 916 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 MS4A14Q96JA4 679 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 MAML3Q96JK9 1138 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 CNOT6LQ96LI5 555 aaKnown RBP8.81□□□□□ -1
ATG4A-201ENST00000343524 DCLRE1BQ9H816 532 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 LY9Q9HBG7 655 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 ATP8A2Q9NTI2 1148 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 GALNT8Q9NY28 637 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 CNOT7Q9UIV1 285 aaKnown RBP8.81□□□□□ -1
ATG4A-201ENST00000343524 MYH7BA7E2Y1 1941 aa8.81□□□□□ -1
ATG4A-201ENST00000343524 CETN3O15182 167 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 CEP104O60308 925 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ATP6V1G1O75348 118 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 PALMO75781 387 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ANXA1P04083 346 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 IGKV5-2P06315 115 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 KCNA3P22001 575 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 CCNE1P24864 410 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 GSTT1P30711 240 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 LONP1P36776 959 aaKnown RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 ATP2C1P98194 919 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 OCRLQ01968 901 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 PLS1Q14651 629 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 RPS6KA1Q15418 735 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 TTI2Q6NXR4 508 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 SYCP3Q8IZU3 236 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 TBC1D16Q8TBP0 767 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 KCNV2Q8TDN2 545 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 SCFD2Q8WU76 684 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 LPIN2Q92539 896 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 AZIN2Q96A70 460 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 MTMR8Q96EF0 704 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 RMDN2Q96LZ7 410 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 NR1H4Q96RI1 486 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 PRMT1Q99873 361 aaKnown RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 LZTS2Q9BRK4 669 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 METTL22Q9BUU2 404 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 RNF26Q9BY78 433 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 UBE2OQ9C0C9 1292 aaKnown RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 CARD9Q9H257 536 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 CUEDC2Q9H467 287 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 CABP5Q9NP86 173 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 CCDC87Q9NVE4 849 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 PARP2Q9UGN5 583 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 SIPA1L3O60292 1781 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 PEX11AO75192 247 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 RHOBTB3O94955 611 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 GCP02774 474 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ZFXP17010 805 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 ALDH1B1P30837 517 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 HOXC9P31274 260 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 PSMD7P51665 324 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 USP4Q13107 963 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 SLC4A8Q2Y0W8 1093 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 Q4G0T1 1027 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 COBLL1Q53SF7 1204 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ARL6IP4Q66PJ3 421 aaKnown RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 LRRC43Q8N309 656 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 GIMAP8Q8ND71 665 aaPredicted RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.8□□□□□ -1
ATG4A-201ENST00000343524 P2RX5Q93086 422 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 FAM136AQ96C01 138 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ZNF653Q96CK0 615 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 NUDCD1Q96RS6 583 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.8□□□□□ -1
ATG4A-201ENST00000343524 ZMYND12Q9H0C1 365 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 BLZF1Q9H2G9 400 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 PABPC3Q9H361 631 aaKnown RBP8.8□□□□□ -1
ATG4A-201ENST00000343524 PIDD1Q9HB75 910 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ETNK1Q9HBU6 452 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ARHGEF10LQ9HCE6 1279 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 KCNJ14Q9UNX9 436 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 ZNF510Q9Y2H8 683 aa8.8□□□□□ -1
ATG4A-201ENST00000343524 RTL9Q8NET4 1388 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 MYH2Q9UKX2 1941 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 CCDC85CA6NKD9 419 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 FOXP2O15409 715 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 GPAA1O43292 621 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 BUB1O43683 1085 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 PFDN1O60925 122 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 CIAO1O76071 339 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 EYA4O95677 639 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 SERPING1P05155 500 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 FAM200BP0CF97 657 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 CASP1P29466 404 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 SERPINB4P48594 390 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 TUBP50607 506 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 CACNA2D1P54289 1103 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 RASSF7Q02833 373 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 MFSD10Q14728 455 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 CCDC6Q16204 474 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 TDRD12Q587J7 1177 aaKnown RBP8.79□□□□□ -1
ATG4A-201ENST00000343524 TTC38Q5R3I4 469 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 RNF220Q5VTB9 566 aa8.79□□□□□ -1
ATG4A-201ENST00000343524 PDXDC1Q6P996 788 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms