RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GCFC2P16383 781 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CACNB1Q02641 598 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 WDR44Q5JSH3 913 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM69Q86WT6 500 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 VPS39Q96JC1 886 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 FGD4Q96M96 766 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SENP6Q9GZR1 1112 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CPSF3Q9UKF6 684 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PDS5AQ29RF7 1337 aaKnown RBP3.53□□□□□ -1.85
CSMD3-202ENST00000339701 MYPNQ86TC9 1320 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 KDM1AO60341 852 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 MOCS3O95396 460 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 GSNP06396 782 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 STX3Q13277 289 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 PPIGQ13427 754 aaKnown RBP eCLIP3.53□□□□□ -1.85
CSMD3-202ENST00000339701 POSTNQ15063 836 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 MTERF2Q49AM1 385 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 IER5Q5VY09 327 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 IKBIPQ70UQ0 350 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 PCGF5Q86SE9 256 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 MAGEB5Q9BZ81 275 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 COA1Q9GZY4 146 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 DBNDD1Q9H9R9 158 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 DDX21Q9NR30 783 aaKnown RBP eCLIP3.53□□□□□ -1.85
CSMD3-202ENST00000339701 INTUQ9ULD6 942 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 PPME1Q9Y570 386 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 ZHX2Q9Y6X8 837 aa3.53□□□□□ -1.85
CSMD3-202ENST00000339701 PSME4Q14997 1843 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 A0A1B0GUL6 1792 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MIF4GDA9UHW6 222 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NEMP1O14524 444 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TBC1D12O60347 775 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 POMCP01189 267 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 AASDHQ4L235 1098 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 BROXQ5VW32 411 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 POTEAQ6S8J7 498 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NANOGNBQ7Z5D8 188 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ZNF513Q8N8E2 541 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TTC13Q8NBP0 860 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PANK1Q8TE04 598 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SSH1Q8WYL5 1049 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MCCC1Q96RQ3 725 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CCDC28BQ9BUN5 200 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SLC32A1Q9H598 525 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SYBUQ9NX95 663 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ABCA3Q99758 1704 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L12C9JPN9 530 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L21D6R901 530 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GFPT2O94808 682 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PARP1P09874 1014 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 HCLS1P14317 486 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 IL15P40933 162 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PSMC4P43686 418 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KPNA1P52294 538 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CCDC92Q53HC0 331 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PROCA1Q8NCQ7 364 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 DDX50Q9BQ39 737 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ZKSCAN3Q9BRR0 538 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MED10Q9BTT4 135 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 H0YJX3 145 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SPAG6O75602 509 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SERPINB3P29508 390 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 IL9RQ01113 521 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MAPK11Q15759 364 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RNF187Q5TA31 235 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ATG16L1Q676U5 607 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CCDC63Q8NA47 563 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NACC1Q96RE7 527 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SH3GL3Q99963 347 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SNX25Q9H3E2 840 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CLRN2A0PK11 232 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TESPA1A2RU30 521 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ASB14A6NK59 587 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KCNQ3O43525 872 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NDUFS2O75306 463 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 C6orf222P0C671 652 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MYL4P12829 197 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ST8SIA6P61647 398 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TYRO3Q06418 890 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KYAT1Q16773 422 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ABCB5Q2M3G0 1257 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ST13P4Q8IZP2 240 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PHACTR3Q96KR7 559 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PRRX2Q99811 253 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TUBGCP4Q9UGJ1 667 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KIAA0391O15091 583 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 DYNC1LI2O43237 492 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CALUO43852 315 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ZRANB2O95218 330 aaKnown RBP eCLIP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 EPB41P11171 864 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MAPK4P31152 587 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ITGADQ13349 1161 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CASP8Q14790 479 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 BARGINQ6ZT62 677 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NLRP9Q7RTR0 991 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 UPF1Q92900 1129 aaKnown RBP eCLIP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SEZ6LQ9BYH1 1024 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SAC3D1A6NKF1 404 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 USP17L5A8MUK1 530 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms